BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	4,881,249	T→A	7.1%	V96D (GTC→GAC)	uacT →	uric acid permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,881,249	0	T	A	7.1%	356.2 / 13.4	124	V96D (GTC→GAC)	uacT	uric acid permease
Reads supporting (aligned to +/- strand): ref base T (57/57); new base A (4/5); total (61/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.40e-01

Only 100 of 124 total aligned reads displayed.

AGGCCGCCGGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTCACCGGTACG  >  NC_002947/4881102‑4881397

aGGCCGCCGGGTTGTCCTGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCg                                                                                                                                                    <  1:233934/150‑1 (MQ=255)

  gccgccGGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGgc                                                                                                                                                  >  2:371383/1‑150 (MQ=255)

   ccgccgGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGgca                                                                                                                                                 <  1:383769/150‑1 (MQ=255)

   ccgccgGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGgca                                                                                                                                                 <  2:344855/150‑1 (MQ=255)

    cgccgGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGgcag                                                                                                                                                >  1:1460576/1‑150 (MQ=255)

    cgccgGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGACGgcag                                                                                                                                                <  2:1291712/150‑1 (MQ=255)

       cgGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGTGGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCAt                                                                                                                                             >  1:623845/1‑150 (MQ=255)

        gggTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCCGTTGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCAtg                                                                                                                                            <  1:159730/150‑1 (MQ=255)

         ggTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGACGgcagcgaaa                                                                                                                                           <  2:543347/150‑5 (MQ=255)

          gTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCAtggt                                                                                                                                          <  1:200974/150‑1 (MQ=255)

           ttGGCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTCCCGTACCGGTCCGGTGGACATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCAtggtg                                                                                                                                         <  2:575738/150‑1 (MQ=255)

              tCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGcc                                                                                                                                      >  2:470679/1‑150 (MQ=255)

                ccGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCAt                                                                                                                                    <  1:2313108/150‑1 (MQ=255)

                ccGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCAt                                                                                                                                    >  1:2220561/1‑150 (MQ=255)

                ccGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCAt                                                                                                                                    >  1:2084147/1‑150 (MQ=255)

                ccGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCCAGCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGACGTCGGCAGCATGGTGGCCAt                                                                                                                                    >  1:1972058/1‑150 (MQ=255)

                 cGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATg                                                                                                                                   >  1:761337/1‑150 (MQ=255)

                  gTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATgg                                                                                                                                  >  2:498876/1‑150 (MQ=255)

                     aagaagTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCg                                                                                                                               <  2:1477748/150‑1 (MQ=255)

                          gTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATg                                                                                                                          >  2:705722/1‑150 (MQ=255)

                          gTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTAACATCATCCAGTCGTTCGGTATCGGCCCAGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCCTg                                                                                                                          >  2:567278/1‑150 (MQ=255)

                            cGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGCCGGCCATGGCCACCATGct                                                                                                                        <  1:246181/150‑2 (MQ=255)

                               tttCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCa                                                                                                                                     >  1:890700/1‑134 (MQ=255)

                               tttCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCa                                                                                                                                     <  2:890700/134‑1 (MQ=255)

                               tttCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCgg                                                                                                                     >  1:883639/1‑150 (MQ=255)

                                 tCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCg                                                                                                                   >  1:2319445/1‑150 (MQ=255)

                                    tGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCCTCATCCAGTCGTTCTGTAGCGTCCCGGTGGGCACAAGCATTCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                <  1:535327/150‑1 (MQ=255)

                                    tGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCATCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                <  1:1773116/150‑1 (MQ=255)

                                    tGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                >  2:100301/1‑150 (MQ=255)

                                    tGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                <  1:933237/150‑1 (MQ=255)

                                    tGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                >  1:1934479/1‑150 (MQ=255)

                                     gATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTggg                                                                                                               >  2:1661241/1‑150 (MQ=255)

                                     gATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTggg                                                                                                               >  2:2079423/1‑150 (MQ=255)

                                         aaCGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTg                                                                                                           >  1:1037427/1‑150 (MQ=255)

                                            gCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAg                                                                                                        >  1:609735/1‑150 (MQ=255)

                                            gCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAg                                                                                                        <  2:609735/150‑1 (MQ=255)

                                              cGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAggg                                                                                                      <  1:95905/150‑1 (MQ=255)

                                              cGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAggg                                                                                                      <  2:883639/150‑1 (MQ=255)

                                              cGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAggg                                                                                                      <  2:2084147/150‑1 (MQ=255)

                                              cGACCTGATGGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAggg                                                                                                      <  1:100301/150‑1 (MQ=255)

                                               gACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAgggg                                                                                                     >  1:2126850/1‑150 (MQ=255)

                                                  cTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCCTGGGTGTGCAGCTGATc                                                                                                  <  2:1731401/150‑1 (MQ=255)

                                                   tGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGTTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                <  1:2005177/135‑1 (MQ=255)

                                                   tGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGTTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTgg                                                                                                                >  2:2005177/1‑135 (MQ=255)

                                                    gCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCtt                                                                                                <  1:2079423/150‑1 (MQ=255)

                                                      ttGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCg                                                                                              <  2:144355/150‑1 (MQ=255)

                                                      ttGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCg                                                                                              <  1:498876/150‑1 (MQ=255)

                                                      ttGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCg                                                                                              <  1:449458/150‑1 (MQ=255)

                                                        gTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGgc                                                                                            >  1:295446/1‑150 (MQ=255)

                                                               gCGTCGCTACCATCATCCAGTCGTTCGTTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCg                                                                                              >  1:1934567/1‑141 (MQ=255)

                                                               gCGTCGCTACCATCATCCAGTCGTTCGTTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCg                                                                                              <  2:1934567/141‑1 (MQ=255)

                                                                 gTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGCCGCGACCATc                                                                                   <  2:955846/150‑1 (MQ=255)

                                                                     cTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCCTCGCTg                                                                               >  1:710341/1‑150 (MQ=255)

                                                                      tACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTc                                                                                               <  2:895033/133‑1 (MQ=255)

                                                                      tACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTc                                                                                               >  1:895033/1‑133 (MQ=255)

                                                                         catcatCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCgg                                                                           >  2:2299245/1‑150 (MQ=255)

                                                                         catcatCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCgg                                                                           >  2:2299323/1‑150 (MQ=255)

                                                                         catcatCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCCCTGCCgg                                                                           >  2:1486936/1‑150 (MQ=255)

                                                                         catcatCCAGGCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGGCGGGCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCgg                                                                           >  1:2342914/1‑150 (MQ=255)

                                                                              tcCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGGGACCATCGCTGCCGGGttct                                                                      >  1:1723957/1‑150 (MQ=255)

                                                                               ccAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGttcgt                                                                     >  1:1166000/1‑148 (MQ=255)

                                                                                cAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGttcttc                                                                    <  2:295446/150‑1 (MQ=255)

                                                                                cAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGttcttc                                                                    <  2:657922/150‑1 (MQ=255)

                                                                                  gTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGatcttc                                                                    >  1:499323/1‑148 (MQ=255)

                                                                                   tCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCg                                                                   <  1:1992582/148‑1 (MQ=255)

                                                                                   tCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCg                                                                   >  2:1992582/1‑148 (MQ=255)

                                                                                   tCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGc                                                                 <  1:1661241/150‑1 (MQ=255)

                                                                                      ttCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATg                                                              <  1:371383/150‑1 (MQ=255)

                                                                                       tCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGc                                                             <  2:1037427/150‑1 (MQ=255)

                                                                                            aTCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATc                                                        <  2:2220561/150‑1 (MQ=255)

                                                                                                gCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATc                                                                                   <  2:1996460/119‑1 (MQ=255)

                                                                                                gCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATc                                                                                   >  1:1996460/1‑119 (MQ=255)

                                                                                                gCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCgcgc                                                    <  2:1256949/150‑1 (MQ=255)

                                                                                                 cccGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGAGGGCCGCCTGATGGCCATGCCCTGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGcc                                                   <  1:876905/150‑1 (MQ=255)

                                                                                                   cGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGt                                                 >  1:2428570/1‑150 (MQ=255)

                                                                                                     gTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTc                                               <  2:2319445/150‑1 (MQ=255)

                                                                                                              cGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCCGCCTGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAg                                      <  1:1742615/150‑1 (MQ=255)

                                                                                                                     cGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTGCGGCATGCTGATCGCGCCGTTCATGTCCACGGgtgtgc                               >  2:604913/1‑148 (MQ=255)

                                                                                                                        tgatgaTGGGTGCCCGTTTCGCTGAGGCCGGCGGCAGGGTGCGCAGGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGct                            <  2:623845/150‑1 (MQ=255)

                                                                                                                          atgatgGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGc                             <  2:1572992/147‑1 (MQ=255)

                                                                                                                          atgatgGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGc                             >  1:1572992/1‑147 (MQ=255)

                                                                                                                            gatgGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGcttctt                        >  1:1070654/1‑150 (MQ=255)

                                                                                                                            gatgGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGcttctt                        <  1:1905295/150‑1 (MQ=255)

                                                                                                                              tgGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGt                                                                         <  2:721539/99‑1 (MQ=255)

                                                                                                                                  tGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGttctt                                                                     <  2:1647595/99‑1 (MQ=255)

                                                                                                                                  tGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCAcc                  >  1:841435/1‑150 (MQ=255)

                                                                                                                                    ccAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATc                                                        >  2:864073/1‑110 (MQ=255)

                                                                                                                                    ccAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATc                                                        <  1:864073/110‑1 (MQ=255)

                                                                                                                                     cAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCAt                                                               >  2:1784757/1‑102 (MQ=255)

                                                                                                                                      caccatgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGc                             >  1:1598912/7‑135 (MQ=255)

                                                                                                                                      caccatgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGc                             <  2:1598912/129‑1 (MQ=255)

                                                                                                                                      aGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTg              >  1:443396/1‑150 (MQ=255)

                                                                                                                                       gTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTc                                <  2:507416/131‑1 (MQ=255)

                                                                                                                                         catgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGTGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTc           >  1:751356/4‑150 (MQ=255)

                                                                                                                                         catgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTc           >  2:474375/4‑150 (MQ=255)

                                                                                                                                          atgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAg                                      >  2:1128977/3‑122 (MQ=255)

                                                                                                                                          atgCTGCCGACGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAg                                      <  1:1128977/120‑1 (MQ=255)

                                                                                                                                           cGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTCAc         <  2:122559/150‑1 (MQ=255)

                                                                                                                                              tGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGa                                                                                        <  2:2240148/68‑1 (MQ=255)

                                                                                                                                                  gTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTCACCGGTACg  >  2:851389/1‑150 (MQ=255)

AGGCCGCCGGGTTGTCCCGTGAAGAAGTCGCTTTCCTGATCAACGCCGACCTGCTTGTCGCTGGCGTCGCTACCATCATCCAGTCGTTCGGTATCGGCCCGGTGGGCATCCGCATGCCGGTGATGATGGGTGCCAGTTTCGCTGCCGTCGGCAGCATGGTGGCCATGGCCGGCATGCCCGGCGTGGGCCTGCAGGGGATCTTCGGCGCGACCATCGCTGCCGGGTTCTTCGGCATGCTGATCGCGCCGTTCATGTCCAAGGTTGTCCGCTTCTTCCCACCGCTGGTCACCGGTACG  >  NC_002947/4881102‑4881397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`