Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,134,009 G→T 5.2% W348L (TGG→TTG) ‡ tolC → agglutination protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,134,0090GT 5.2% 355.3 / 5.9 115W348L (TGG→TTG) ‡tolCagglutination protein
Reads supporting (aligned to +/- strand):  ref base G (63/45);  new base T (3/3);  total (66/49)
Fisher's exact test for biased strand distribution p-value = 6.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.66e-01

Only 100 of 117 total aligned reads displayed.

CTGGCAAGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGCTGTAC  >  NC_002947/5133860‑5134157
                                                                                                                                                      |                                                                                                                                                      
cTGGCAAGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTg                                                                                                                                                        <  2:1026248/150‑1 (MQ=255)
 tGGCAAGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGCCATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTgg                                                                                                                                                       >  1:321773/1‑150 (MQ=255)
    cAAGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCAGACTTCGCAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAAc                                                                                                                                                    <  1:42296/150‑1 (MQ=255)
     aaGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACg                                                                                                                                                   >  2:172829/1‑150 (MQ=255)
         tGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACACGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCAt                                                                                                                                               <  2:2044172/150‑1 (MQ=255)
          ctcgttctcactgtcgaggacgtccagcagggtgcgctggcccaggccgaactggtcctggtaggccgcacgcacacgcttggtggtttcggcgtattcacgcgcggtcggcagctgcttgctggcgttgttcaTGGCGTGGAACGCCAt                                                                                                                                               >  1:1271915‑M1/135‑150 (MQ=255)
            cGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGaa                                                                                                                                            <  2:821465/150‑1 (MQ=255)
               ggAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGaacaa                                                                                                                                         <  1:1586120/150‑1 (MQ=255)
                 agaTGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACg                                                                                                                                     >  2:1420128/1‑150 (MQ=255)
                    tGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGCGCCTGGCGTGGAACGCCATGAACAACGCCa                                                                                                                                  >  1:337483/1‑150 (MQ=255)
                     gAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCa                                                                                                                                                >  1:617372/1‑137 (MQ=255)
                     gAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCa                                                                                                                                                <  2:617372/137‑1 (MQ=255)
                       aCTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagca                                                                                                                               >  1:140517/1‑150 (MQ=255)
                       aCTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagca                                                                                                                               >  1:138865/1‑150 (MQ=255)
                         tACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaag                                                                                                                             >  2:2339439/1‑150 (MQ=255)
                           cAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaagca                                                                                                                           >  2:1073434/1‑150 (MQ=255)
                              ccTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCt                                                                                                                        >  1:2299769/1‑150 (MQ=255)
                               cTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTg                                                                                                                       <  1:504163/150‑1 (MQ=255)
                                tGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGc                                                                                                                      <  1:2339439/150‑1 (MQ=255)
                                 gTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGcc                                                                                                                     <  2:652321/150‑1 (MQ=255)
                                      gcgGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACcg                                                                                                                >  1:51288/1‑150 (MQ=255)
                                              aGCGACAAGGCTCGCCTACAGTCCGACGCGCACAATATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCa                                                                                                                                                <  2:1380746/112‑1 (MQ=255)
                                              aGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCa                                                                                                                                                >  1:1380746/1‑112 (MQ=255)
                                               gCGACAAGGCTCGCATACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAAt                                                                                                       <  2:1133549/150‑1 (MQ=255)
                                                  aCAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACg                                                                                                    >  1:1640617/1‑150 (MQ=255)
                                                     aGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCg                                                                                                 <  2:1640617/150‑1 (MQ=255)
                                                       gCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGaa                                                                                               >  2:1375603/1‑150 (MQ=255)
                                                        cTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGaaa                                                                                              <  2:140517/150‑1 (MQ=255)
                                                        cTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGaaa                                                                                              <  2:138865/150‑1 (MQ=255)
                                                         tCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACCACGTACTGCGTTAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATGCGCCGAAac                                                                                             >  2:919694/1‑150 (MQ=255)
                                                         tCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAac                                                                                             <  2:1467985/150‑1 (MQ=255)
                                                            ccTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATAc                                                                                                     <  1:913423/139‑1 (MQ=255)
                                                            ccTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATAc                                                                                                     >  2:913423/1‑139 (MQ=255)
                                                              tACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGTAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAAccacca                                                                                        >  2:1484252/1‑150 (MQ=255)
                                                              tACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCTTGAATACGCCGAAAccacca                                                                                        >  1:1062626/1‑150 (MQ=255)
                                                                cAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGaaa                                                                                              >  2:944307/1‑142 (MQ=255)
                                                                cAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGaaa                                                                                              <  1:944307/142‑1 (MQ=255)
                                                                 aGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGc                                                                                     <  1:1622817/150‑1 (MQ=255)
                                                                       gACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCGTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGtgtg                                                                                <  2:1655536/150‑1 (MQ=255)
                                                                       gACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGtgtg                                                                                >  2:1488823/1‑150 (MQ=255)
                                                                            gcACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTgtgcgtgc                                                                           <  1:144143/150‑1 (MQ=255)
                                                                              acaAGATCAACCAGGCACTGGACATTCGGAACAACGCCCTGCGTGAGTTGACCGAGGACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCgg                                                                         >  2:1255870/1‑150 (MQ=255)
                                                                              acaAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCgg                                                                         >  2:1931310/1‑150 (MQ=255)
                                                                              acaAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCgg                                                                         >  2:1978671/1‑150 (MQ=255)
                                                                              acaAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCgg                                                                         >  2:2113566/1‑150 (MQ=255)
                                                                              acaAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCgg                                                                         >  2:491432/1‑150 (MQ=255)
                                                                                  gATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTa                                                                     >  1:1622746/1‑150 (MQ=255)
                                                                                  gATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTa                                                                     >  1:1030462/1‑150 (MQ=255)
                                                                                    tCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGCCGAATCTTACTGTATGCAGGTG‑‑GACCACGCGTTAAGACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTAcc                                                                   >  1:280203/1‑150 (MQ=255)
                                                                                    tCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaa                                                                                                                              >  2:1684237/1‑91 (MQ=255)
                                                                                    tCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaa                                                                                                                              <  1:1684237/91‑1 (MQ=255)
                                                                                     cAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCa                                                                  <  1:1375603/150‑1 (MQ=255)
                                                                                      aaCCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCCTGTGCGTGCGGCATACCAg                                                                 >  2:228241/1‑150 (MQ=255)
                                                                                         cAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTAGCACCACCTGTTTCCTGCTAGCAAGCAGCTGCTTTCCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGAc                                                              <  1:1484252/150‑1 (MQ=255)
                                                                                               cTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTc                                                        >  1:996431/1‑150 (MQ=255)
                                                                                                tGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCg                                                       >  2:79721/1‑150 (MQ=255)
                                                                                                tGGACATTCGCAACAACGCCCGGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCg                                                       <  2:227995/150‑1 (MQ=255)
                                                                                                  gACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGc                                                     <  2:499415/150‑1 (MQ=255)
                                                                                                     aTTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTg                                                  >  2:2306714/1‑150 (MQ=255)
                                                                                                     aTTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTg                                                  <  2:51288/150‑1 (MQ=255)
                                                                                                      ttCGGAACACCGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGACACCACCAAGCGTGTGCGTGCGGCCTACCATGACCAGTTCGGCCTgg                                                 <  1:284523/150‑1 (MQ=255)
                                                                                                      ttCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGTTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 >  2:1582682/1‑150 (MQ=255)
                                                                                                      ttCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 <  1:79721/150‑1 (MQ=255)
                                                                                                      ttCGCAACAACACCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 <  1:1073434/150‑1 (MQ=255)
                                                                                                       tCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaagca                                                                                                                           <  2:336468/75‑1 (MQ=255)
                                                                                                       tCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCagcaagca                                                                                                                           >  1:336468/1‑75 (MQ=255)
                                                                                                       tCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTggg                                                >  2:913793/1‑150 (MQ=255)
                                                                                                          caacaaCGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCa                                                                  <  2:652528/129‑1 (MQ=255)
                                                                                                          caacaaCGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCa                                                                  >  1:652528/1‑129 (MQ=255)
                                                                                                          caacaaCGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCa                                             <  1:1875767/150‑1 (MQ=255)
                                                                                                            acaacGCCCTGCGTGAGTTGACCGAGAACCTGAGCCGGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAgc                                           <  1:1978671/150‑1 (MQ=255)
                                                                                                              aacGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGAc                                                              >  1:847181/1‑129 (MQ=255)
                                                                                                              aacGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAgcgc                                         >  1:948563/1‑150 (MQ=255)
                                                                                                                cGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCAc                                       >  2:1900660/1‑150 (MQ=255)
                                                                                                                 gCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 >  1:1570940/1‑139 (MQ=255)
                                                                                                                 gCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 <  2:1570940/139‑1 (MQ=255)
                                                                                                                 gCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCAcc                                      <  1:630527/150‑1 (MQ=255)
                                                                                                                 gCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCAcc                                      >  2:1129779/1‑150 (MQ=255)
                                                                                                                     tGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGACCACAGTCCGTGGTCAGCCGCTCACCCCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCctgc                                  <  1:2113566/150‑1 (MQ=255)
                                                                                                                       cGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCctgctg                                >  1:1784621/1‑150 (MQ=255)
                                                                                                                         tGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGa                              <  1:1900660/150‑1 (MQ=255)
                                                                                                                               gACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCt                        <  1:2306714/150‑1 (MQ=255)
                                                                                                                                ttgctggcgttgttcaTGGCGTTCCACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGa                                                               <  1:2200573‑M1/94‑1 (MQ=255)
                                                                                                                                ttgctggcgttgttcaTGGCGTTCCACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGa                                                               >  2:2200573‑M1/17‑110 (MQ=255)
                                                                                                                                aCCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTgg                                                 >  1:964302/1‑124 (MQ=255)
                                                                                                                                  cGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGAcc                                                             <  1:2199416/110‑1 (MQ=255)
                                                                                                                                    agaACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACa                   <  2:2224784/150‑1 (MQ=255)
                                                                                                                                    agaACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACa                   <  2:80729/150‑1 (MQ=255)
                                                                                                                                    agaACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACa                   >  1:2224784/1‑150 (MQ=255)
                                                                                                                                        gttgttcaTGGCGTTCCACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGt                                                                                                           >  2:1522919‑M1/9‑58 (MQ=255)
                                                                                                                                        ccTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTga               >  2:2379812/1‑150 (MQ=255)
                                                                                                                                         cTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTgag              >  2:1632117/1‑150 (MQ=255)
                                                                                                                                            ttcaTGGCGTTCCACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGt                 <  2:195413‑M1/140‑1 (MQ=255)
                                                                                                                                            ttcaTGGCGTTCCACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGt                 >  1:195413‑M1/5‑144 (MQ=255)
                                                                                                                                              ccTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCTTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGa         <  2:1062626/150‑1 (MQ=255)
                                                                                                                                               cTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAg        <  2:948563/150‑1 (MQ=255)
                                                                                                                                                TGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGc       <  2:639085‑M1/150‑1 (MQ=255)
                                                                                                                                                 GGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGCt      >  1:1255870‑M1/1‑150 (MQ=255)
                                                                                                                                                    GTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATATGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGCTGTa   >  2:1765782‑M1/1‑150 (MQ=255)
                                                                                                                                                     TGGACCGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGCTGTAc  >  1:111261‑M1/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
CTGGCAAGCTGGCGTGGAGATGAACTACAACCTGTTCCGCGGTGGCAGCGACAAGGCTCGCCTACAGTCCGACGCGCACAAGATCAACCAGGCACTGGACATTCGCAACAACGCCCTGCGTGAGTTGACCGAGAACCTGAGCCTGGCGTGGAACGCCATGAACAACGCCAGCAAGCAGCTGCCGACCGCGCGTGAATACGCCGAAACCACCAAGCGTGTGCGTGCGGCCTACCAGGACCAGTTCGGCCTGGGCCAGCGCACCCTGCTGGACGTCCTCGACAGTGAGAACGAGCTGTAC  >  NC_002947/5133860‑5134157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: