Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,337,484 | C→A | 6.5% | L296M (CTG→ATG) | PP_4696 → | nitrogen regulation protein NR(I) |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,337,484 | 0 | C | A | 6.5% | 376.7 / 5.7 | 117 | L296M (CTG→ATG) | PP_4696 | nitrogen regulation protein NR(I) |
Reads supporting (aligned to +/- strand): ref base C (51/58); new base A (4/4); total (55/62) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 121 total aligned reads displayed.
TACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATC > NC_002947/5337336‑5337633 | tACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCt < 1:896399/150‑1 (MQ=255) gCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGaa > 1:1044643/1‑150 (MQ=255) tGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGaaaa > 1:727675/1‑150 (MQ=255) ccTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCt < 2:1044643/150‑1 (MQ=255) cTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTg < 1:2098094/150‑1 (MQ=255) tCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTgg < 1:2261991/150‑1 (MQ=255) tCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTgg < 2:1895573/150‑1 (MQ=255) gATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGcc > 2:1693950/1‑150 (MQ=255) aTGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTAGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCa > 1:1844838/1‑150 (MQ=255) agtGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCAACGAAAAAAGAAAAACCTGGCCAAggcc < 2:759448/148‑1 (MQ=255) ttGGCGAACTGCCGCTCGACGCCAAGGCTCGCCTGGTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAggccg < 2:1203047/150‑1 (MQ=255) ttGGCGAACTGCCGCTCGAAGCGCAGGATCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAgtccg < 2:421268/150‑1 (MQ=255) ttGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAggccg < 2:2037604/150‑1 (MQ=255) ggCGAACTGCCGCTCGAAGCCCAGGCTCGGCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAggccggc < 2:210013/150‑1 (MQ=255) gCGAACTGCCGCTCGAAGCCCAGGCTCAACTACTACGTGTGATGGAGGATGTCGAGATGCGCCTGGGGGGTTGGGTGCAGGCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAggccggcc > 2:2104983/1‑150 (MQ=255) aaCTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGCAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATTGCCGCGACCCACCGCGACCTGAAAAAACTGGCCAAGGACGGCCAgg > 2:330550/1‑149 (MQ=255) gCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCTGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTg > 1:358246/1‑127 (MQ=255) gCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCTGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTg < 2:358246/127‑1 (MQ=255) cTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTg > 2:953603/1‑126 (MQ=255) cTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTg < 1:953603/126‑1 (MQ=255) cTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGaa < 2:1859384/150‑1 (MQ=255) cTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGaa < 2:2136429/150‑1 (MQ=255) cGAAGCCCAGGCTCGCCTGCTGCGTGTGCTTCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGa < 1:17767/150‑1 (MQ=255) gAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGGTCCGTGAAGAc > 2:1053900/1‑150 (MQ=255) atcccATGCTCGCCTGCTGCGTCTGCTGCAGGAATGCGAGATACGCCGTGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACtt < 1:108695/148‑1 (MQ=255) aGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACtt < 2:2068188/150‑1 (MQ=255) gCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTg < 2:719546/150‑1 (MQ=255) cccAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGt < 2:1399859/150‑1 (MQ=255) ccAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGAc < 1:793640/145‑1 (MQ=255) ccAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGAc > 2:793640/1‑145 (MQ=255) ccAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTa > 2:128280/1‑150 (MQ=255) aGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTAtt < 1:272212/150‑1 (MQ=255) gCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGAc > 2:1875085/1‑150 (MQ=255) ccTGCTGGGGGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACt > 2:31950/1‑150 (MQ=255) ccTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCAGTCAAGACTTGCATCACCGAcc > 2:1194419/1‑149 (MQ=255) ctgctgCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTg < 2:406129/150‑1 (MQ=255) tgctgtGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGc < 1:882303/150‑1 (MQ=255) cGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTc > 2:1448088/1‑150 (MQ=255) ctgcAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGcc > 1:1716280/1‑150 (MQ=255) ccgcAGGAAGGCGAGATACGCCGGGTAGGTGCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGcc < 1:330550/148‑1 (MQ=255) gcAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGt < 2:910436/125‑1 (MQ=255) ggAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGa > 1:309590/1‑114 (MQ=255) ggAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGa < 2:309590/114‑1 (MQ=255) ggAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGaa < 1:128280/150‑1 (MQ=255) gAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGAGCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGTCTTGTATTACCGACTGAACGTCCTCGGCCTGAAg > 2:1239724/1‑150 (MQ=255) gCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGc < 1:1830978/150‑1 (MQ=255) gagaTACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCg > 1:8322/1‑150 (MQ=255) cGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCACGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCTCTGAAGCTGCCGGCCCTg < 2:1844838/150‑1 (MQ=255) gggTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTa < 1:2187206/106‑1 (MQ=255) gggTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTa > 2:2187206/1‑106 (MQ=255) gggTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGcgcg > 1:652921/1‑150 (MQ=255) gTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGc < 2:632034/129‑1 (MQ=255) gTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGc > 1:632034/1‑129 (MQ=255) gTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGGTCCGTGCAGACTTGTATTACCGACTGCCCGTCATCGCCCTGAAGCTGCCGGCCCTGcgcgcgcggg > 2:526843/1‑148 (MQ=255) ttCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTgg > 1:1442357/1‑150 (MQ=255) ttCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCACTGAAGCTGCCGGCCCTGCGCTCGCGTgg > 1:499818/1‑150 (MQ=255) ttCGGGGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTgg > 2:2314091/1‑150 (MQ=255) tCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGccc > 2:580697/1‑121 (MQ=255) tCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGccc < 1:580697/121‑1 (MQ=255) tCGGTGCAGTCGCAAAAGGTCGATGTGCGACAGACAAACCTTGTTCAGGTTGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGc < 1:2376924/150‑1 (MQ=255) cGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCa < 2:1442357/150‑1 (MQ=255) gTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGc > 1:2369937/1‑150 (MQ=255) gCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGa < 1:1870182/150‑1 (MQ=255) gCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGa < 1:611392/150‑1 (MQ=255) gCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATGACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGa < 1:1122931/150‑1 (MQ=255) aGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACg < 2:1803188/150‑1 (MQ=255) cAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAAc < 1:2104983/150‑1 (MQ=255) ggTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGAt > 2:1812855/1‑150 (MQ=255) gTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCTACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATc < 2:1661505/150‑1 (MQ=255) gTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATc > 1:68241/1‑150 (MQ=255) gATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCAc < 2:1560158/90‑1 (MQ=255) gATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCAc > 1:1560158/1‑90 (MQ=255) tgtgCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGaa > 1:1397601/1‑67 (MQ=255) tgCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCg < 2:2012324/61‑1 (MQ=255) gcCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGaa > 1:109133/1‑97 (MQ=255) gcCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGaa < 2:109133/97‑1 (MQ=255) gcCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGCAGCTGCCGGCCCTGCGCGAGCGTGGCAGCTACGTTTACGAGATCGCCAACGTCt < 2:1727972/150‑1 (MQ=255) ccTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACTTCAAc < 1:2219041/133‑1 (MQ=255) ccTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACTTCAAc > 2:2219041/1‑133 (MQ=255) cTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCTTCGACCCGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTc > 1:1593724/1‑150 (MQ=255) cTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTc < 2:685421/150‑1 (MQ=255) tGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCNTcc < 2:1507216/150‑1 (MQ=255) tCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCGCGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGGGGCAGCGACGTCAACGAGATCGCCCACGCCTCCCTcg > 2:1085531/1‑150 (MQ=255) tCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTcg > 1:1883718/1‑150 (MQ=255) gccgcGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGt < 2:171781/51‑1 (MQ=255) gccgcGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGt > 1:171781/1‑51 (MQ=255) gccgcGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTcgcc > 2:294210/1‑150 (MQ=255) gccgcGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGAGTGGCAGCGACGTCAACGAGATCGCCAGCGTCTGCCTcccc > 1:622734/1‑150 (MQ=255) cgcgACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTcgcccg > 1:1468889/1‑150 (MQ=255) gcgACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGAc > 1:1028331/1‑117 (MQ=255) gcgACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGAc < 2:1028331/117‑1 (MQ=255) gcgACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTcgcccgc > 1:1419982/1‑150 (MQ=255) ccACCGCGACATGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCaa > 1:1896658/1‑129 (MQ=255) ccACCGCGACATGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCaa < 2:1896658/129‑1 (MQ=255) ccACCGCGACATGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCaa < 2:1895942/129‑1 (MQ=255) ccACCGCGACATGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCaa > 1:1893023/1‑129 (MQ=255) ccACCGCGACATGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCaa > 1:1895942/1‑129 (MQ=255) ccGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAgcgc < 1:1812855/150‑1 (MQ=255) ccTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAAc < 1:1548312/109‑1 (MQ=255) cTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATc > 1:266290/1‑150 (MQ=255) | TACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTGCTGCGTGTGCTGCAGGAAGGCGAGATACGCCGGGTAGGTTCGGTGCAGTCGCAAAAGGTCGATGTGCGCCTGATCGCCGCGACCCACCGCGACCTGAAAAACCTGGCCAAGGCCGGCCAGTTCCGTGAAGACTTGTATTACCGACTGCACGTCATCGCCCTGAAGCTGCCGGCCCTGCGCGAGCGTGGCAGCGACGTCAACGAGATCGCCAACGTCTTCCTCGCCCGCCAGAGCGCTCGCATC > NC_002947/5337336‑5337633 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |