| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,356,563 | T→G | 6.8% | E749A (GAG→GCG) | infB ← | translation initiation factor IF‑2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,356,563 | 0 | T | G | 6.8% | 292.3 / 10.3 | 102 | E749A (GAG→GCG) | infB | translation initiation factor IF‑2 |
| Reads supporting (aligned to +/- strand): ref base T (47/48); new base G (5/2); total (52/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
GCCTTCGAAGATCACAACGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGCCGAACAGT > NC_002947/5356418‑5356712 | gCCTTCGAAGATCACAACGTCATCACGCAGTACGCGAATCGGACGGATTCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGCCACGTACTTCGGCGACACCCAGGATGTTCTcgcg > 2:338226/1‑150 (MQ=255) tCGAAGATCACAACGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACa > 1:1297579/1‑150 (MQ=255) gAAGATCACAACGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATc > 2:994936/1‑150 (MQ=255) aaCGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCGTACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAg > 2:831896/1‑150 (MQ=255) aaCGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAg > 1:1042300/1‑150 (MQ=255) aaCGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAg > 2:867926/1‑150 (MQ=255) aCGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGt > 1:668456/1‑150 (MQ=255) cGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTc > 2:1985258/1‑150 (MQ=255) aCGCGAATCGGACGGTCGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGcc < 2:1217503/150‑1 (MQ=255) gcgAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGccgt > 1:486220/1‑148 (MQ=255) cgAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttc < 1:867926/150‑1 (MQ=255) gAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttct > 1:441282/1‑150 (MQ=255) gAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttct < 2:441282/150‑1 (MQ=255) aaTCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttctt < 2:1974207/150‑1 (MQ=255) gACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGt > 1:1198251/1‑150 (MQ=255) gACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGt > 1:493692/1‑150 (MQ=255) gACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGAAGt > 1:1424973/1‑150 (MQ=255) gCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCgat < 2:331637/150‑1 (MQ=255) ggTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCgatga < 1:1789422/150‑1 (MQ=255) acGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCg > 1:1521609/1‑150 (MQ=255) cGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGt < 1:1985258/150‑1 (MQ=255) cGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGt < 1:338226/150‑1 (MQ=255) ggTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa > 1:95238/1‑131 (MQ=255) ggTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa < 2:95238/131‑1 (MQ=255) ggTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTa > 2:947640/1‑150 (MQ=255) ggTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTa < 2:1814924/150‑1 (MQ=255) ccTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCAAGAATTCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCa > 1:258288/1‑150 (MQ=255) ccTCGATGACCATACAGACAGCGATGGCGCCGACCTCGGGAGAACGGCACACGACACGTACCTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCa > 1:2255254/1‑150 (MQ=255) gATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGtt < 1:371409/150‑1 (MQ=255) aCCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGtaa < 1:1067700/150‑1 (MQ=255) ccATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAgg > 1:2281935/1‑107 (MQ=255) ccATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAgg < 2:2281935/107‑1 (MQ=255) cATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGTATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTAGTAGATCACGTTGtaata > 2:751597/1‑150 (MQ=255) cATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCGCGAGAACATcctg < 1:35649/87‑4 (MQ=255) cATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCGCGAGAACATcctg > 2:35649/1‑84 (MQ=255) aTACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGtaataa < 2:1297579/150‑1 (MQ=255) tACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAAc < 2:1417227/150‑1 (MQ=255) agccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCa > 1:1922331/1‑150 (MQ=255) gccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttc > 1:2396596/1‑106 (MQ=255) gccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCcttc < 2:2396596/106‑1 (MQ=255) gccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCat > 1:155576/1‑150 (MQ=255) ccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTg > 2:651659/1‑138 (MQ=255) ccagcGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTg < 1:651659/138‑1 (MQ=255) aTGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGa < 1:998527/150‑1 (MQ=255) tGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGAc < 2:1424973/150‑1 (MQ=255) tGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGAc < 1:994936/150‑1 (MQ=255) tGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGAc < 2:1042300/150‑1 (MQ=255) tGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGAc < 1:1017692/150‑1 (MQ=255) gttcgcCGAAGTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACCTCTTCGATGATGGCGTAGATCACGTTGTAATAACGCATATCCAGAc > 2:1044560/4‑150 (MQ=255) gcCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGc < 2:2151291/71‑1 (MQ=255) gcCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGc > 1:2151291/1‑71 (MQ=255) gcCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTc < 1:1950245/150‑1 (MQ=255) ccGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTcc > 2:2372308/1‑150 (MQ=255) aCTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCt < 2:2137403/150‑1 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCCGGGCCTTCTTGACGTCTTCGATGATGTCGTAGCTCTCGATGTAATCTCGCCTACCCAGACCTTACTACTcg > 2:389871/1‑150 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGatgatg < 2:2113526/105‑1 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGatgatg > 1:2113526/1‑105 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGAt > 1:844101/1‑113 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGAt < 2:844101/113‑1 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGtaa < 1:2311665/123‑1 (MQ=255) ttCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGtaa > 2:2311665/1‑123 (MQ=255) cGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTcgac < 1:761634/150‑1 (MQ=255) aaCGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTc > 2:1445124/1‑136 (MQ=255) aaCGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTc < 1:1445124/136‑1 (MQ=255) aCGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCtt > 1:227832/1‑150 (MQ=255) gAACACGTCACGTACTTCGGCGACACCAACGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTgcg > 1:1242926/1‑150 (MQ=255) acacGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATcc > 1:904406/1‑122 (MQ=255) acacGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATcc < 2:904406/122‑1 (MQ=255) acgtcacgtACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCa > 1:254287/1‑150 (MQ=255) tcacgtACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa > 1:1214142/1‑73 (MQ=255) tcacgtACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa < 2:835034/73‑1 (MQ=255) tcacgtACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa > 1:835034/1‑73 (MQ=255) tcacgtACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGa < 2:1214142/73‑1 (MQ=255) tACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATc < 1:2213118/150‑1 (MQ=255) aCTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTACTCGACGATCTTGCGCGCACCGGCATCg > 2:722698/1‑150 (MQ=255) cTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCgg > 1:1254229/1‑150 (MQ=255) ttCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGgc < 1:2214513/150‑1 (MQ=255) tCGGCGACACCCTGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGCCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGgca < 2:1327334/150‑1 (MQ=255) cGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCgatga < 2:1861391/75‑1 (MQ=255) cGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGgcac < 1:2372308/150‑1 (MQ=255) cGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGgcacgca < 2:254287/150‑1 (MQ=255) acacCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGcacgcacg < 2:2255254/150‑1 (MQ=255) acCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGc < 1:1478296/94‑1 (MQ=255) acCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGc > 2:1478296/1‑94 (MQ=255) acCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCTACGATCTTGCGCGCACCGGCATCGGCACGCACGtt > 1:903331/1‑150 (MQ=255) ccAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCt > 1:515000/1‑59 (MQ=255) ccAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCt < 2:515000/59‑1 (MQ=255) ccAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCAc < 2:1566520/79‑1 (MQ=255) ccAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCAc > 1:1566520/1‑79 (MQ=255) cAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGaa < 2:155576/150‑1 (MQ=255) agcgATGTTCGCGAGAACATCGCTGCCGAGCATGCCGGTCAGGGCTTTCTTAACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGaa > 1:778721/4‑150 (MQ=255) agcgATGTTCGCGAGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGaa > 1:1556350/4‑150 (MQ=255) cgATGTTCGCGAGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTcgac > 1:202269/2‑112 (MQ=255) cgATGTTCGCGAGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTcgac < 2:202269/111‑1 (MQ=255) gATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGcc < 2:668456/150‑1 (MQ=255) gATGTTCGCGAGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGcc > 2:1085928/1‑150 (MQ=255) tcGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGtt < 1:1172513/71‑1 (MQ=255) tcGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGtt > 2:1172513/1‑71 (MQ=255) tcGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGCCGAACAGt > 2:505294/1‑150 (MQ=255) tcGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGCCGAACAGt > 1:2033672/1‑150 (MQ=255) | GCCTTCGAAGATCACAACGTCATCACGCAGTACGCGAATCGGACGGTTGCGGTACACGGTACCCTCGATGACCATACAGCCAGCGATGGCGCCGAACTTCGGCGAACGGAACACGTCACGTACTTCGGCGACACCCAGGATGTTCTCGCGAACATCGCTGCCGAGCATGCCGGTCAGGGCCTTCTTGACGTCTTCGATGATGTCGTAGATCACGTTGTAATAACGCATATCCAGACCTTCCTGCTCGACGATCTTGCGCGCACCGGCATCGGCACGCACGTTGAAGCCGAACAGT > NC_002947/5356418‑5356712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |