Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 492,234 G→A 5.1% H64Y (CAC→TAC)  lptD ← LPS‑assembly protein LptD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947492,2340GA 5.1% 288.1 / 2.3 96H64Y (CAC→TAC) lptDLPS‑assembly protein LptD
Reads supporting (aligned to +/- strand):  ref base G (36/54);  new base A (3/2);  total (40/56)
Fisher's exact test for biased strand distribution p-value = 3.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

ACGCGGCACCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAG  >  NC_002947/492091‑492381
                                                                                                                                               |                                                                                                                                                   
aCGCGGCACCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCgg                                                                                                                                               >  2:590534/1‑150 (MQ=255)
  gcgGCACCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGgc                                                                                                                                             >  2:412849/1‑150 (MQ=255)
     gCACCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGcgcg                                                                                                                                          >  2:884763/1‑150 (MQ=255)
       aCCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGt                                                                                                                                        >  1:705595/1‑150 (MQ=255)
        cccAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTg                                                                                                                                       <  1:1526869/150‑1 (MQ=255)
         ccAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTgg                                                                                                                                      >  1:1448061/1‑150 (MQ=255)
           aGTNCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCa                                                                                                                                    >  2:1496755/1‑150 (MQ=255)
            gTCCCGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCaa                                                                                                                                   <  1:1920802/150‑1 (MQ=255)
               cAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgtt                                                                                                                                <  1:590534/150‑1 (MQ=255)
               cAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgtt                                                                                                                                <  1:675469/150‑1 (MQ=255)
               cAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgtt                                                                                                                                <  2:1820232/150‑1 (MQ=255)
                 ggTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              >  2:1076314/1‑150 (MQ=255)
                 ggTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              <  2:1397758/150‑1 (MQ=255)
                    ggCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGa                                                                                                                           <  1:1193072/150‑1 (MQ=255)
                       tGTAGTCTTCGCTGCGCGACTTCAGAGTGCCTCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTg                                                                                                                        >  1:1242835/1‑150 (MQ=255)
                         tAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTggg                                                                                                                      <  2:933931/150‑1 (MQ=255)
                              ttCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGtttt                                                                                                                 <  2:372733/150‑1 (MQ=255)
                                cGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCTGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTgg                                                                                                               <  2:575739/150‑1 (MQ=255)
                                cGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTgg                                                                                                               <  1:1687031/150‑1 (MQ=255)
                                cGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCATGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTgg                                                                                                               <  2:2291170/150‑1 (MQ=255)
                                 gCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACAGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTggg                                                                                                              <  1:2092261/150‑1 (MQ=255)
                                 gCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGAAAGCTGGGGTCACAGTCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTggg                                                                                                              >  1:1741952/1‑150 (MQ=255)
                                    gcgcGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCtt                                                                                                           <  2:1680023/150‑1 (MQ=255)
                                     cgcgACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCtt                                                                                                           <  1:991153/149‑1 (MQ=255)
                                     cgcgACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCtt                                                                                                           >  2:991153/1‑149 (MQ=255)
                                     cgcgACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTg                                                                                                          <  2:553125/150‑1 (MQ=255)
                                     cgcgACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTg                                                                                                          >  2:1819479/1‑150 (MQ=255)
                                         aCTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGt                                                                                                      <  1:1819479/150‑1 (MQ=255)
                                         aCTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGt                                                                                                      <  1:1129042/150‑1 (MQ=255)
                                           ttCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTg                                                                                                                                                     <  1:1921250/101‑1 (MQ=255)
                                           ttCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTg                                                                                                                                                     >  2:1921250/1‑101 (MQ=255)
                                           ttCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGtt                                                                                                                   <  2:2449243/135‑1 (MQ=255)
                                           ttCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGtt                                                                                                                   >  1:2449243/1‑135 (MQ=255)
                                           ttCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTcc                                                                                                    <  1:2190249/150‑1 (MQ=255)
                                           gtCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTcc                                                                                                    >  1:2004217/2‑150 (MQ=255)
                                             cAGATCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGCAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCa                                                                                                  <  2:1185860/150‑1 (MQ=255)
                                              aGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCaa                                                                                                 >  2:1461387/1‑150 (MQ=255)
                                              aGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCaa                                                                                                 >  2:2066958/1‑150 (MQ=255)
                                              aGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCaa                                                                                                 >  1:697935/1‑150 (MQ=255)
                                              aGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCaa                                                                                                 <  2:659610/150‑1 (MQ=255)
                                               gACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAac                                                                                                <  1:525925/150‑1 (MQ=255)
                                                   aCGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAaccacc                                                                                            >  1:629911/1‑150 (MQ=255)
                                                       cccTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcg                                                                                        <  1:1100753/150‑1 (MQ=255)
                                                         cTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcggc                                                                                      >  1:250469/1‑150 (MQ=255)
                                                         cTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcggc                                                                                      <  1:1720360/150‑1 (MQ=255)
                                                         cTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcggc                                                                                      >  2:671389/1‑150 (MQ=255)
                                                            ggCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGGTTGGCCCGGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGa                                                                                   <  2:1900985/150‑1 (MQ=255)
                                                               cTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGacac                                                                                <  2:697935/150‑1 (MQ=255)
                                                                 cGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACtt                                                                              <  2:115537/150‑1 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTcc                                                                                                    >  1:726221/1‑126 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTcc                                                                                                    <  2:726221/126‑1 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcggc                                                                                      >  2:630582/1‑140 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACcggcggc                                                                                      <  1:630582/140‑1 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTgg                                                                            >  2:870521/1‑150 (MQ=255)
                                                                   gTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTgg                                                                            <  1:1461387/150‑1 (MQ=255)
                                                                       ccAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGt                                                                        <  1:1573893/150‑1 (MQ=255)
                                                                       ccAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCACTTAGGTGCTGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGACCGATGTTGACTGGGGTTTTGGGCTTTTTGTCCCGACCACCGGCGGCGGACACTTGGCAGt                                                                        >  1:2232215/1‑150 (MQ=255)
                                                                        cAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              <  2:2199656/95‑1 (MQ=255)
                                                                        cAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              >  1:2199656/1‑95 (MQ=255)
                                                                        cAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCa                                                                                                        <  1:2237678/117‑1 (MQ=255)
                                                                        cAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCa                                                                                                        >  2:2237678/1‑117 (MQ=255)
                                                                        cAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTc                                                                       <  2:250469/150‑1 (MQ=255)
                                                                           cACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGaa                                                                    <  1:1289312/150‑1 (MQ=255)
                                                                            aCGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTACACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAAc                                                                   >  2:1744090/1‑150 (MQ=255)
                                                                            aCGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTACACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAAc                                                                   >  2:1737913/1‑150 (MQ=255)
                                                                                     tCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCt                                                          <  1:1425547/150‑1 (MQ=255)
                                                                                       cGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCTCCCTCTCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGc                                                        <  1:412849/150‑1 (MQ=255)
                                                                                          aGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTACACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCaa                                                     <  1:1737913/150‑2 (MQ=255)
                                                                                          aGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTACACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCaa                                                     <  1:1744090/150‑2 (MQ=255)
                                                                                            tttCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTa                                                   >  2:2021232/1‑150 (MQ=255)
                                                                                             ttCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTAc                                                  <  2:1741952/150‑1 (MQ=255)
                                                                                                 gCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              >  1:1492896/1‑70 (MQ=255)
                                                                                                 gCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAgttgt                                                                                                                              <  2:1492896/70‑1 (MQ=255)
                                                                                                  cTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTa                                               <  2:681706/148‑1 (MQ=255)
                                                                                                  cTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTa                                               >  1:681706/1‑148 (MQ=255)
                                                                                                   ttCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGa                                            <  1:1804119/150‑1 (MQ=255)
                                                                                                   ttCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGa                                            >  1:2041204/1‑150 (MQ=255)
                                                                                                   ttCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTACACCGGGCGCGGTGGCAAGTTGTTGACTGGGGGTTGGGCGGGGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGACCTGTTCGGCTGCCACTACGTATGa                                            >  1:1333022/1‑150 (MQ=255)
                                                                                                    tCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCACCCCCCCGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGGCACTACGGATGAg                                           <  2:929346/150‑1 (MQ=255)
                                                                                                       cccgccGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTg                                        <  2:1448061/150‑1 (MQ=255)
                                                                                                       cccgccGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTg                                        <  1:870521/150‑1 (MQ=255)
                                                                                                        ccgccgCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAaccac                                                                                             <  2:1755311/96‑1 (MQ=255)
                                                                                                        ccgccgCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAaccac                                                                                             >  1:1755311/1‑96 (MQ=255)
                                                                                                             gcTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCaga                                  >  2:705039/1‑150 (MQ=255)
                                                                                                                 cGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGtt                              <  1:2066958/150‑1 (MQ=255)
                                                                                                                       cGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAggg                        >  2:163416/1‑150 (MQ=255)
                                                                                                                        ggAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGc                       >  2:1856079/1‑150 (MQ=255)
                                                                                                                         gAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCGACTACGTATGGTTTGGCCAGAGGTTGCAGGGcc                      >  2:2227698/1‑150 (MQ=255)
                                                                                                                           gCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCcag                    <  2:2232215/150‑1 (MQ=255)
                                                                                                                             tGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCcagca                  <  1:1496755/150‑1 (MQ=255)
                                                                                                                                cGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGAc               <  1:671389/150‑1 (MQ=255)
                                                                                                                                     gCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGTccgccg          <  2:1740089/150‑1 (MQ=255)
                                                                                                                                       aCCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGt        >  2:1305939/1‑150 (MQ=255)
                                                                                                                                       aCCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGt        >  2:1167683/1‑150 (MQ=255)
                                                                                                                                        ccTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGtt       <  2:407899/150‑1 (MQ=255)
                                                                                                                                            cGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCa   <  1:261658/150‑1 (MQ=255)
                                                                                                                                            cGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCa   <  1:2227698/150‑1 (MQ=255)
                                                                                                                                             gTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAg  >  1:1057392/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
ACGCGGCACCCAGTCCAGGTGGCTGTAGTCTTCGCTGCGCGACTTCAGACCACGGCCCTTGGCCTCGGTAACCAGCACGGGCCGGTCCGCAGTTTCGGCTTCGCCCGCCGCTTCGGTGCCGGAGCTGACGGCTGCACCTTCGTGCACCGGGCGCGGTGGCAAGTTGTTGACTGGGGTTTTGGGCTTGCAGTCCCAACCACCGGCGGCGGACACTTGGCAGTCGAACTGTTCGGCTGCCACTACGTATGAGGTGGCCAGAGGTTGCAGGGCCAGCAGACCGCCGGTTACCAG  >  NC_002947/492091‑492381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: