Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,507,064 T→G 5.1% W93G (TGG→GGG)  cycA → D‑alanine/beta‑alanine/D‑serine/glycine permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,507,0640TG 5.1% 340.3 / 8.6 117W93G (TGG→GGG) cycAD‑alanine/beta‑alanine/D‑serine/glycine permease
Reads supporting (aligned to +/- strand):  ref base T (58/53);  new base G (2/4);  total (60/57)
Fisher's exact test for biased strand distribution p-value = 4.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01

Only 100 of 117 total aligned reads displayed.

ATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAGGGCTGCTGCT  >  NC_002947/5506917‑5507212
                                                                                                                                                      |                                                                                                                                                    
aTCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTgg                                                                                                                                                    <  2:742090/150‑1 (MQ=255)
     ccTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGATTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCgg                                                                                                                                               >  1:1362771/1‑150 (MQ=255)
      cTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCTCCTGGGCCGGc                                                                                                                                              >  2:707731/1‑150 (MQ=255)
      cTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGc                                                                                                                                              >  1:1929968/1‑150 (MQ=255)
         gCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCgagcag                                                                                                                                           <  2:2168887/150‑6 (MQ=255)
               ccATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTAct                                                                                                                                     <  1:707731/150‑1 (MQ=255)
               ccATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTAct                                                                                                                                     <  2:1129411/150‑1 (MQ=255)
                cATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTActg                                                                                                                                    <  2:704391/150‑1 (MQ=255)
                 aTCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTActgg                                                                                                                                   >  1:275008/1‑150 (MQ=255)
                 aTCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTActgg                                                                                                                                   <  2:1929968/150‑1 (MQ=255)
                  tCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTActggc                                                                                                                                  >  1:1422383/1‑150 (MQ=255)
                      tcatgTTCGTCTTCATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTCGGCCGGCTACTTTACTGGCTGGa                                                                                                                              <  2:1194191/150‑1 (MQ=255)
                       catcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTgg                                                                                                                                                    <  1:150972/127‑1 (MQ=255)
                       catcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTgg                                                                                                                                                    >  2:150972/1‑127 (MQ=255)
                       catcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGAc                                                                                                                             <  1:815650/150‑1 (MQ=255)
                         tcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTAc                                                                                                                                           >  1:1565529/1‑134 (MQ=255)
                         tcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTAc                                                                                                                                           <  2:1565529/134‑1 (MQ=255)
                         tcTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCt                                                                                                                           >  2:319192/1‑150 (MQ=255)
                          cTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTa                                                                                                                          >  1:1794579/1‑150 (MQ=255)
                           ttCGTCTACATGATTATAGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTAc                                                                                                                         <  2:2220121/150‑1 (MQ=255)
                              gTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTgg                                                                                                                      >  2:715775/1‑150 (MQ=255)
                              gTCTACATGATTATCGGCTCCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTgg                                                                                                                      <  2:445594/150‑1 (MQ=255)
                                   cATGATTATCGGCTTCATGCTGTTCTTGGTCATGCGAGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTTTATCAAACCGCCCTGCT‑‑‑CCCCTGGGCCGGCCACTTTACTGGCTGGACCTACTGGTTctg                                                                                                                 >  2:664713/1‑150 (MQ=255)
                                        ttATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTggg                                                                                                            >  2:488026/1‑150 (MQ=255)
                                        ttATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTggg                                                                                                            <  1:484769/150‑1 (MQ=255)
                                         tATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggt                                                                                                           >  2:1862236/1‑150 (MQ=255)
                                          agcGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTAATTTATGGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggtt                                                                                                          <  1:157899/148‑2 (MQ=255)
                                          aTCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggtg                                                                                                          <  1:994744/150‑1 (MQ=255)
                                          aTCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggtg                                                                                                          <  1:2084038/150‑1 (MQ=255)
                                          aTCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCgagca                                                                                                                                            <  1:1717913/116‑5 (MQ=255)
                                           tCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggtgg                                                                                                         >  2:275210/1‑150 (MQ=255)
                                               cTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCAc                                                                                                     >  2:168544/1‑150 (MQ=255)
                                               cTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCAc                                                                                                     >  1:821363/1‑150 (MQ=255)
                                                    tGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCa                                                                                                <  1:715775/150‑1 (MQ=255)
                                                    tGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCa                                                                                                >  1:1085987/1‑150 (MQ=255)
                                                     gCTNTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCAt                                                                                               >  2:1517991/1‑150 (MQ=255)
                                                      cTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCagg                                                                                              <  2:1413182/150‑3 (MQ=255)
                                                       tGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACACGGCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGACCCCTGAACCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCAtcg                                                                                             >  2:1125806/1‑148 (MQ=255)
                                                       tGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTg                                                                                             >  2:838417/1‑150 (MQ=255)
                                                        gTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACATGAGCTAATGCTGGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGc                                                                                            >  1:1995507/1‑150 (MQ=255)
                                                         ttcttcGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGcc                                                                                           >  1:56247/1‑150 (MQ=255)
                                                         ttcttcGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGcc                                                                                           >  1:486918/1‑150 (MQ=255)
                                                            ttcGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGAc                                                                                        <  1:838417/150‑1 (MQ=255)
                                                            ttcGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGAc                                                                                        >  1:898400/1‑150 (MQ=255)
                                                            ttcGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGAc                                                                                        <  2:1794579/150‑1 (MQ=255)
                                                               gTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTa                                                                                                                                            <  1:1654001/95‑1 (MQ=255)
                                                               gTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTa                                                                                                                                            >  2:1654001/1‑95 (MQ=255)
                                                               gTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTGTACTTTCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTg                                                                                     >  1:2380862/1‑150 (MQ=255)
                                                                tCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTgg                                                                                    <  1:1088271/150‑1 (MQ=255)
                                                                tCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTgg                                                                                    <  2:529883/150‑1 (MQ=255)
                                                                tCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTgg                                                                                    >  1:529883/1‑150 (MQ=255)
                                                                  aTGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCTCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCAt                                                                                               <  1:758926/137‑1 (MQ=255)
                                                                    gcgcgcCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTcgc                                                                                <  2:1524157/150‑1 (MQ=255)
                                                                    gcgcgcCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTcgc                                                                                <  2:1524183/150‑1 (MQ=255)
                                                                        gcCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATc                                                                            <  1:451074/150‑1 (MQ=255)
                                                                          cATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCgagca                                                                                                                                            <  1:345236/84‑5 (MQ=255)
                                                                          cATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCgagca                                                                                                                                            >  2:345236/1‑80 (MQ=255)
                                                                           aTGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATcgcc                                                                         >  2:454309/1‑150 (MQ=255)
                                                                           aTGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATcgcc                                                                         >  2:1694459/1‑150 (MQ=255)
                                                                                cGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTTGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTa                                                                    <  2:2157199/150‑1 (MQ=255)
                                                                                    ctgctgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTgg                                                                                                                                                    >  1:1886230/1‑66 (MQ=255)
                                                                                    ctgctgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTgg                                                                                                                                                    <  2:1886230/66‑1 (MQ=255)
                                                                                    ctgctgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGc                                                                                                                                              >  2:2293697/1‑72 (MQ=255)
                                                                                     tgctgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACAccc                                                               >  2:1863792/1‑150 (MQ=255)
                                                                                      gctgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACAgccg                                                              <  2:221609/150‑2 (MQ=255)
                                                                                       ctgctgTCGATCCTGAACGACAAGGCGTTGATCGACGTT‑‑TCCGCCGACCTGCGCGGCCGCTGGGCCGGGTAGTTTACTGGCTGGACCTACTGGTTCTTCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAg                                                             >  2:821248/1‑150 (MQ=255)
                                                                                        tgctgTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACATGCGCGGCCCCTGGGGCGGCTACTTTACTCGCTGGACATACGGGTGCTGCTGGGTGGTCACCGGCAGTGCCGACGTGGTCGCCCTCGCCGCCTACACCCAGt                                                            >  2:253572/1‑150 (MQ=255)
                                                                                            gTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTg                                                        <  1:1517991/150‑1 (MQ=255)
                                                                                             tCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCGCGGGATGTGGCGTTCTGGCCCAACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTgg                                                       <  1:168544/150‑1 (MQ=255)
                                                                                               gAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTgg                                                                                    >  1:491258/1‑119 (MQ=255)
                                                                                               gAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTgg                                                                                    <  2:491258/119‑1 (MQ=255)
                                                                                               gAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGtt                                                     >  1:1157639/1‑150 (MQ=255)
                                                                                                 aCCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTcc                                                   <  2:275008/150‑1 (MQ=255)
                                                                                                  ccTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGggtg                                                                                                          <  2:1371738/94‑1 (MQ=255)
                                                                                                  ccTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTccc                                                  >  1:507472/1‑150 (MQ=255)
                                                                                                   cTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCga                                                                                                                                               >  2:764817/1‑55 (MQ=255)
                                                                                                   cTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCAGGGGCCga                                                                                                                                               <  1:764817/56‑2 (MQ=255)
                                                                                                    tGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCg                                                >  1:1404405/1‑150 (MQ=255)
                                                                                                    tGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCg                                                >  1:115302/1‑150 (MQ=255)
                                                                                                        cTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGAc                                                                                        >  1:389979/1‑106 (MQ=255)
                                                                                                         tACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTg                                           >  2:2243439/1‑150 (MQ=255)
                                                                                                           cAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGcc                                         >  2:2448517/1‑150 (MQ=255)
                                                                                                                cGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGt                                    <  1:2268112/150‑1 (MQ=255)
                                                                                                                   tCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGTACCTACTGGTTCTGCTGGCTCGTCACCGGCATTGCCGAGGTGGGCGCGGTGTTCGCCTACGCCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGa                                 <  1:1863792/150‑1 (MQ=255)
                                                                                                                      tCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGAc                                                                                                                             >  1:2059649/1‑55 (MQ=255)
                                                                                                                      tCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATAc                              >  1:1685302/1‑150 (MQ=255)
                                                                                                                      tCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATAc                              >  2:811785/1‑150 (MQ=255)
                                                                                                                      tCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGAGGCCGCGATCACCGCCTACACCCAGTTCTGGTTGCCCCACCTGCCGCAGTGGATAc                              >  2:744649/1‑150 (MQ=255)
                                                                                                                           ttt‑‑tCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGgcg                         >  2:2056637/1‑150 (MQ=255)
                                                                                                                                     ccgACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCt                  >  1:695709/1‑150 (MQ=255)
                                                                                                                                       gACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTCCTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGc                <  1:1299521/150‑1 (MQ=255)
                                                                                                                                       gACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGc                <  1:744649/150‑1 (MQ=255)
                                                                                                                                          cTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTa             >  1:96106/1‑150 (MQ=255)
                                                                                                                                          cTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTa             <  2:809022/150‑1 (MQ=255)
                                                                                                                                          cTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTa             >  2:1133624/1‑150 (MQ=255)
                                                                                                                                          cTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTa             >  1:95948/1‑150 (MQ=255)
                                                                                                                                            gCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAgg           <  1:275210/150‑1 (MQ=255)
                                                                                                                                                  ccccTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAGGgctgct     <  2:1571018/150‑1 (MQ=255)
                                                                                                                                                  ccccTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAGGgctgct     >  2:1988744/1‑150 (MQ=255)
                                                                                                                                                     cTGGGCCGGCTACTTTACTGGCTGGACCGACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAGGgctgctgct  <  2:455377/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                    
ATCAGCCTGGCCGGGCCATCGATCATCTTCGTCTACATGATTATCGGCTTCATGCTGTTCTTCGTCATGCGCGCCATGGGCGAACTGCTGCTGTCGAACCTGAACTACAAGTCGTTCATCGACTTT‑‑TCCGCCGACCTGCTCGGCCCCTGGGCCGGCTACTTTACTGGCTGGACCTACTGGTTCTGCTGGGTGGTCACCGGCATTGCCGACGTGGTCGCGATCGCCGCCTACACCCAGTTCTGGTTCCCCGACCTGCCGCAGTGGATACCGGCGCTGACCTGCGTAGGGCTGCTGCT  >  NC_002947/5506917‑5507212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: