| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 496,099 | T→A | 8.5% | intergenic (‑63/‑33) | PP_0408 ← / → PP_0409 | hypothetical protein/two‑component system sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 496,099 | 0 | T | A | 8.5% | 320.2 / 14.8 | 105 | intergenic (‑63/‑33) | PP_0408/PP_0409 | hypothetical protein/two‑component system sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base T (50/46); new base A (6/3); total (56/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
TTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGCTG > NC_002947/495950‑496248 | tttttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgct < 1:1095988/150‑1 (MQ=255) tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc < 1:1098060/150‑1 (MQ=255) tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc < 1:1098081/150‑1 (MQ=255) tttCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCAtgctgc < 1:2358512/150‑1 (MQ=255) tgggCATCTGCGGCCAGGGCGCCGAGTTGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCAt < 2:947608/148‑1 (MQ=255) tCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCAt < 1:1754430/150‑1 (MQ=255) tccactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATg > 1:1530037/6‑150 (MQ=255) cGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATg > 1:30554/1‑150 (MQ=255) cactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCCTg > 2:1087429/4‑148 (MQ=255) cactCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATg < 1:1087429/145‑1 (MQ=255) actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCTGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCGGGATGTGAGTGGCCCGTGACGGCCATGCTGCATGGca > 2:1592251/3‑149 (MQ=255) actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGcc < 2:1530037/148‑1 (MQ=255) actCGGCGCCCTGGCCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGCCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATCATGCATGGcc > 1:2243301/3‑150 (MQ=255) gcggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATGGCCGTcac < 1:1428222/150‑3 (MQ=255) cggcCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCAGCATGGCCGTcacg < 2:30554/150‑4 (MQ=255) ccAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGcc < 2:293066/150‑1 (MQ=255) ccAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGcc < 1:108263/150‑1 (MQ=255) aGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCaa < 2:794670/150‑1 (MQ=255) aGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCaa < 2:690801/150‑1 (MQ=255) gcCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGa > 1:2271747/1‑150 (MQ=255) cGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGc > 1:321847/1‑150 (MQ=255) ggAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGtata < 1:932239/150‑1 (MQ=255) gAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCttt > 2:50590/1‑132 (MQ=255) aaGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGa > 1:1328620/1‑150 (MQ=255) ggACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATg > 2:1352090/1‑150 (MQ=255) ggACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATg < 1:1352090/150‑1 (MQ=255) ggACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATg < 1:1351065/150‑1 (MQ=255) ggACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATg > 2:2377359/1‑150 (MQ=255) gACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGt < 2:2191542/135‑1 (MQ=255) gACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGt > 1:2191542/1‑135 (MQ=255) ccGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGCTGAAg > 1:1855867/1‑150 (MQ=255) aGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGa < 2:2108519/150‑1 (MQ=255) ggCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCCAGTCGAGCGTATAGATGAAGCGAg > 2:318466/1‑150 (MQ=255) cAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGc > 1:486446/1‑150 (MQ=255) cAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGc > 1:527429/1‑150 (MQ=255) gcagcaCATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCGGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTc > 2:1485713/1‑150 (MQ=255) gcagcaCATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTc < 2:17230/150‑1 (MQ=255) cacaTTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCt < 1:2162408/150‑1 (MQ=255) cacaTTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCt < 1:1555744/150‑1 (MQ=255) gCGTCGTGGCATAAAGGGTGGACATGAGTCACCACACGGCCAAGATGAAGCCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGACATAGCGAGTGCGGCGCCTGTTGGTTATc < 1:563694/150‑1 (MQ=255) tGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGgctgc < 1:1531131/150‑1 (MQ=255) gATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCAGGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGATATCGGCTGCTtg > 2:1299554/1‑150 (MQ=255) aTAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGa > 2:1542483/1‑102 (MQ=255) aTAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGa < 1:1542483/102‑1 (MQ=255) tAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTtgtg > 2:164336/1‑150 (MQ=255) tgtgGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGc > 2:1899407/1‑150 (MQ=255) tgtgGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGc < 2:1615958/150‑1 (MQ=255) gACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCtt > 2:908579/1‑150 (MQ=255) aaCATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGGCTAGATGTCCTTGCCAATTCATGGGGTTAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCtt < 1:1485713/149‑1 (MQ=255) aCATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGgct > 2:2023167/1‑133 (MQ=255) tGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGAtt < 2:486446/150‑1 (MQ=255) aaCCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTTGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTgg > 2:535630/1‑150 (MQ=255) aaCCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTgg < 1:1299554/150‑1 (MQ=255) aaGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCaa > 1:217389/1‑150 (MQ=255) ggCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTgg > 1:2357017/1‑108 (MQ=255) ccANAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGccc > 2:1506831/1‑150 (MQ=255) ccAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTACCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCg > 2:839659/1‑112 (MQ=255) ccAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTACCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCg < 1:839659/112‑1 (MQ=255) cAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCg > 1:2182944/1‑150 (MQ=255) aGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTg > 1:2035080/1‑62 (MQ=255) aGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTg < 2:2035080/62‑1 (MQ=255) aTGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGgc > 1:932038/1‑150 (MQ=255) aaCCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTg > 1:2206770/1‑150 (MQ=255) aCCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGc > 1:2239430/1‑150 (MQ=255) ccGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGTGAGTGCGTCGCCTGTTGGTAATCGACTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGcc > 1:1984412/1‑150 (MQ=255) cGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGccc > 2:282787/1‑150 (MQ=255) gCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCctc > 2:851039/1‑150 (MQ=255) aGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGc > 2:2078556/1‑127 (MQ=255) aGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGc < 1:2078556/127‑1 (MQ=255) gCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGACATGTGCAATTCGAGCGTATAGATGAAGCACTTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgt < 1:2377359/150‑1 (MQ=255) ccTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTTCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgtg > 2:410293/1‑150 (MQ=255) ccTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgtg < 1:1058849/150‑1 (MQ=255) ccTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCtgtg > 1:1256270/1‑150 (MQ=255) aGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTg < 1:282787/150‑1 (MQ=255) tATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGa < 2:932038/150‑1 (MQ=255) tATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGa < 2:2206770/150‑1 (MQ=255) tttGCCCGTGACCGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGCTATCGGCAGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGc < 2:1328620/150‑1 (MQ=255) tGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCt < 2:527429/150‑1 (MQ=255) ccGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGAc > 1:814609/1‑150 (MQ=255) ccGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGAc > 1:494300/1‑150 (MQ=255) ccGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGAc < 2:844559/150‑1 (MQ=255) acGTGACAGACATGCTACATGGCCGACTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGGTCAAATCCAGAACCCAGGCCAACCCCGAGGCGCGTCCCTCTGTGGTGCGGGAGCCTGAc > 2:1106080/2‑150 (MQ=255) gTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGCAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACca < 1:1106080/150‑1 (MQ=255) agACGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcag > 1:1939899/2‑150 (MQ=255) agACGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcag > 2:146554/2‑150 (MQ=255) gACGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGGGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTTATTGACTGGGCCAATCCCGAGTCGCTGCCCTCTGTGGTGCTGTAGCCTGACcagc > 1:638394/1‑150 (MQ=255) aCGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTCTTGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagca < 1:1592251/150‑1 (MQ=255) cGGCCATGCAGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagcag > 2:1650009/1‑150 (MQ=255) ggCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagcagc > 1:137869/1‑150 (MQ=255) gCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGa < 1:303827/92‑1 (MQ=255) gCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGa > 2:303827/1‑92 (MQ=255) gCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagcagca < 2:1855867/150‑1 (MQ=255) gCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACcagcagca > 1:347454/1‑150 (MQ=255) cATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGt < 1:164336/150‑1 (MQ=255) cATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGt < 1:56870/150‑1 (MQ=255) tgctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTgg < 2:494300/150‑1 (MQ=255) tgctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTgg < 2:1561509/150‑1 (MQ=255) gctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGc > 1:52581/1‑150 (MQ=255) ctgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGCt < 1:1506831/150‑1 (MQ=255) tgcATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGCTg < 1:1899407/150‑1 (MQ=255) | TTTTTCGGCATCGGCGGCCAGGGCGCCGAGTGGAAGGACCGAGGCCAGGCAGCACATTGCCAGCGTCGTGCGATAAAGTGTGGACATGAGTCAACCCAAGGCCAGAATGAAACCGGCAGCCTAATAGTATTTGCCCGTGACGGCCATGCTGCATGGCCGTCTTTGCCAAGTCGAGCGTATAGATGAAGCGAGTGCGTCGCCTGTTGGTTATCGGCTGCTTGTGGCTGCCCTTGATTGCCTGGGCCAAGCCCGAGGCGCTGCCCTCTGTGGTGCTGGAGCCTGACCAGCAGCAGTGGCTG > NC_002947/495950‑496248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |