| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,891,704 | A→T | 6.5% | intergenic (‑31/+145) | plpB ← / ← PP_5166 | NLPA lipoprotein/sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,891,704 | 0 | A | T | 6.5% | 287.1 / 9.1 | 92 | intergenic (‑31/+145) | plpB/PP_5166 | NLPA lipoprotein/sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (45/41); new base T (4/2); total (49/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01 | |||||||||||
TCGAGGATTTCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGATATCTAA > NC_002947/5891555‑5891852 | tCGAGGATTTCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCGGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATcga > 2:1075344/1‑150 (MQ=255)tCGAGGATTTCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATcga > 1:2126313/1‑150 (MQ=255) cGAGGATTTCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATcgac < 1:1277652/150‑1 (MQ=255) tttCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGc > 1:345385/1‑150 (MQ=255) gTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCgg < 2:97121/150‑1 (MQ=255) gCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGt < 1:2361740/150‑1 (MQ=255) tACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGccc > 1:1779164/1‑150 (MQ=255) ggggTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAAcc < 2:1297825/150‑1 (MQ=255) gaggaGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCTCAAccc > 2:410949/5‑149 (MQ=255) tAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGtt < 1:509414/150‑1 (MQ=255) tAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGtt < 1:37076/150‑1 (MQ=255) gCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCa > 1:1433156/1‑150 (MQ=255) ggCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGc < 1:941559/125‑1 (MQ=255) ggCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGc > 2:941559/1‑125 (MQ=255) gCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCa > 1:2032464/1‑150 (MQ=255) aaCCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGt > 1:125923/1‑150 (MQ=255) accaccAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTg < 2:1489039/150‑1 (MQ=255) ccaccaGTTTCTCGGCAGCATCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTgg > 1:911841/1‑150 (MQ=255) ccaccaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTgg < 1:1672733/150‑1 (MQ=255) caccaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCAc > 2:1604596/1‑143 (MQ=255) caccaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCAc < 1:1604596/143‑1 (MQ=255) accaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGc < 2:805977/150‑1 (MQ=255) ccaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGTCGATGGccca < 1:1893114/120‑4 (MQ=255) ccaGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGTCGATGGccca > 2:1893114/1‑117 (MQ=255) caGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGt < 2:125923/150‑1 (MQ=255) gTTTCTCGGCAGCAGCGGCCAGGCCGGAGCACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGa > 1:311521/1‑150 (MQ=255) tcGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATcgac < 1:1945214/103‑1 (MQ=255) tcGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATcgac > 2:1945214/1‑103 (MQ=255) ggCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGAc < 1:1297176/150‑1 (MQ=255) gcagcaGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACg > 1:1261428/1‑150 (MQ=255) gcagcGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCAGCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATa < 2:378041/150‑1 (MQ=255) agcGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATAcc < 2:48171/150‑1 (MQ=255) gcGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATAccc > 1:900487/1‑150 (MQ=255) gcGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATAccc < 2:699201/150‑1 (MQ=255) ccAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAAt > 1:306285/1‑150 (MQ=255) gCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATAc > 1:2305955/1‑140 (MQ=255) gCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATAc < 2:2305955/140‑1 (MQ=255) cGGAGAACGACCGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTa > 2:1799367/1‑150 (MQ=255) agaACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTc < 2:1433156/150‑1 (MQ=255) agaACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTc < 2:911841/150‑1 (MQ=255) cAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGt > 2:1609258/1‑100 (MQ=255) cAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGt < 1:1609258/100‑1 (MQ=255) gcagcaGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAatat > 1:131449/1‑150 (MQ=255) cagcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCttt < 2:306285/150‑1 (MQ=255) gcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCgg < 1:515569/77‑1 (MQ=255) gcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCgg > 2:515569/1‑77 (MQ=255) gcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTa > 1:453470/1‑150 (MQ=255) gcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTa > 1:2084801/1‑150 (MQ=255) gcCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTa < 1:102862/150‑1 (MQ=255) aGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGc < 2:1891793/99‑1 (MQ=255) aGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGc > 1:1891793/1‑99 (MQ=255) aGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACtt > 1:1479234/1‑150 (MQ=255) gTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTa > 2:818135/1‑150 (MQ=255) gTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTa < 2:2032464/150‑1 (MQ=255) cagcagGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTAtt < 2:2084801/150‑1 (MQ=255) agcagGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTc < 2:345385/150‑1 (MQ=255) agcagGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTc < 1:1072739/150‑1 (MQ=255) cagGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCa > 1:80347/1‑150 (MQ=255) ggTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACt > 1:2295209/1‑132 (MQ=255) ggTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACt < 2:2295209/132‑1 (MQ=255) ggTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCaaaa > 1:1516215/1‑150 (MQ=255) tcttctTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAAc > 1:1670047/1‑150 (MQ=255) cttcttCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACa < 2:131449/150‑1 (MQ=255) ttcttcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCttt < 1:2249311/124‑1 (MQ=255) ttcttcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCttt > 2:2249311/1‑124 (MQ=255) cttcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGaa < 2:1784531/150‑1 (MQ=255) ttcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAAt > 1:1710034/1‑150 (MQ=255) ttcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAAt > 1:1172237/1‑150 (MQ=255) tcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAAtt > 2:1647117/1‑150 (MQ=255) tcATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAAtt > 2:1540510/1‑150 (MQ=255) gtCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATaacc > 2:358342/1‑148 (MQ=255) tCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACtt < 1:1166388/116‑1 (MQ=255) tCCTTGTTCTGAATATGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACtt > 2:1166388/1‑116 (MQ=255) cTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTa > 1:1907285/1‑91 (MQ=255) cTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTa < 2:1907285/91‑1 (MQ=255) cTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGcctc < 2:1479234/150‑1 (MQ=255) cTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGcctc < 2:311521/150‑1 (MQ=255) ttGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGCGGCGGACGATACCCAAATTTTTTATTCAGCTGCGATATCTGCAGCTTAGCCGCTTACGCCGAAAACAGAATTACATAAGcctcc > 2:521798/1‑150 (MQ=255) ttGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGcctcc < 2:1670047/150‑1 (MQ=255) tGTTCTGAATCTGGGTCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGcctcct < 1:1075344/150‑1 (MQ=255) ttCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTa > 2:853785/1‑150 (MQ=255) ttCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTa > 1:385160/1‑150 (MQ=255) aaTCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTAGTCCGCAACAATATGTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAg > 2:1296630/1‑150 (MQ=255) aTCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCAAAGAACAGACTTACATAAGCCTCCTTACTCAgg > 1:1087004/1‑150 (MQ=255) tCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTAc < 1:2096810/144‑1 (MQ=255) tCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTAc > 2:2096810/1‑144 (MQ=255) tCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGa < 2:1779164/150‑1 (MQ=255) tCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGa > 1:1325848/1‑150 (MQ=255) tCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGa > 2:837287/1‑150 (MQ=255) attcgCCATCGTCGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGGGGGAGACGATACCCAAATTTTGTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAg > 1:1487174/5‑150 (MQ=255) attcgCCATCGTCGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAg > 1:803270/5‑150 (MQ=255) attcgCCATCGTCGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAg < 2:803270/146‑1 (MQ=255) ttcgCCATCGTCGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGc > 1:551103/4‑150 (MQ=255) ggCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGa > 1:479473/1‑150 (MQ=255) gCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGat < 1:521798/150‑1 (MQ=255) cATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGatat < 2:2204793/150‑1 (MQ=255) tCGACGATGGCGAATCGGGTGCCCAACCTTTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAGAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGATATCt > 1:2277721/1‑150 (MQ=255) gacgaTGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGATATCTaa < 2:453470/150‑1 (MQ=255) | TCGAGGATTTCGGCGTGCGGTACCGGGGTAGCGGCAACCACCAGTTTCTCGGCAGCAGCGGCCAGGCCGGAGAACGACAGGGCAGCAGCCAGGGCAGTGGTCAGCAGGGTCTTCTTCATGGTGGTCCTTGTTCTGAATCTGGGCCATCGACGATGGCGAATCGGGTGCCCAACCGGTTCACCAGTGGGCGTGAGGCGGACGATACCCAAATTTTTTATTCCGCAACAATATCTTTTACTTAGCTGCTTATTCCAAAAACAGAATTACATAAGCCTCCTTACTCAGGAGCGATATCTAA > NC_002947/5891555‑5891852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |