| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 733,854 | T→C | 5.1% | intergenic (+21/+170) | PP_t11 → / ← ndh | tRNA‑Lys/NADH dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 733,854 | 0 | T | C | 5.1% | 296.9 / 2.4 | 96 | intergenic (+21/+170) | PP_t11/ndh | tRNA‑Lys/NADH dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (52/39); new base C (2/3); total (54/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAACCCG > NC_002947/733705‑733998 | tGCTTTGGGAGCAGGATGTCAGGGGTTCGAATCCCCCCCCCCCGACCATTTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCAt < 1:892274/150‑1 (MQ=255) ggAGCAGGATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGc < 1:1947941/150‑1 (MQ=255) agtaTGTCATTAGTTCGATTCCCCTCACCCCGACCATTTTTTTTTCGTTAGCTCAGTTTGTAGATCATTTCGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TTAACAAAGTGCATCTCATGCGAGATGCCCttt < 2:898486/147‑1 (MQ=14) aGGATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCttt < 1:627479/150‑1 (MQ=255) ggATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCATGCGAGATGCCCTTTg < 2:2129126‑M1/150‑2 (MQ=255) gATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCttttt > 2:1141919/1‑150 (MQ=255) gATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCttttt > 1:1443500/1‑150 (MQ=255) gTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCtt < 1:1458619/150‑1 (MQ=255) tCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCAAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCttt < 2:1265356/150‑1 (MQ=255) cAGGAGTTCGATTCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCtttt < 2:1258616/150‑1 (MQ=255) ggAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGc < 1:1896841/150‑1 (MQ=255) aGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCt < 2:2214775/150‑1 (MQ=255) gTTCCAATCCCTGCACCCCGACCATGTCTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGCCCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTc < 2:1861835/150‑1 (MQ=18) ttCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCg > 1:325942/1‑150 (MQ=255) aTCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGA‑CCACCACTGGAGAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGaaaaa > 2:1242955/1‑150 (MQ=18) tcccctccccCCACCCATTTCTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAATGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAAt < 1:2332670/150‑1 (MQ=21) ccccccccccGCCCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATgc < 2:1877374/144‑1 (MQ=255) ccTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCATGCGAGATGCCCTTTg > 2:1884250‑M1/1‑128 (MQ=255) ccTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCATGCGAGATGCCCTTTg < 1:1884250‑M1/129‑2 (MQ=255) cTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCAACTA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATgcgc > 1:1208832/1‑150 (MQ=255) tCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGcc > 2:131708/1‑150 (MQ=255) ccccGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATgcg > 2:1214242/1‑145 (MQ=255) ccccGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTACTTTTGCCTCGAAAAATgcg < 1:1214242/145‑1 (MQ=255) cccGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATc > 2:1055121/1‑150 (MQ=255) ccGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCg > 2:1392006/1‑150 (MQ=255) gACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGgc < 2:2092579/150‑1 (MQ=255) gACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGGCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGgc > 1:2126159/1‑150 (MQ=255) tttttGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAAt < 1:2220850/150‑1 (MQ=255) tGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCa < 1:969735/150‑1 (MQ=255) gggTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCAc < 1:1349948/150‑1 (MQ=255) gTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCt > 1:787259/1‑150 (MQ=255) aGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCt > 2:1535511/1‑150 (MQ=255) gTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCcaca > 1:15647/1‑150 (MQ=255) tAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCacac > 1:17562/1‑150 (MQ=255) ttGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTa > 1:2108319/1‑150 (MQ=255) tGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTAt < 1:1976089/150‑1 (MQ=255) gCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTg < 2:245630/87‑1 (MQ=255) gCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTg > 1:245630/1‑87 (MQ=255) gCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTTCCACACCGCCCCTATGt > 2:962805/1‑150 (MQ=255) ttttAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAGACATCAGCCCCCGGGCGCACGCCGACCTGCACCAACTTGCCACACCGCGCGTATGTaa > 2:1842271/1‑149 (MQ=21) ttttAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAg > 2:1916468/1‑150 (MQ=255) tttAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCCCACCGCCCCTATGTAgg > 2:310639/1‑150 (MQ=255) aaCCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCAt > 1:252377/1‑61 (MQ=255) aaCCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCAt < 2:252377/61‑1 (MQ=255) aCCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCg > 1:1701189/1‑150 (MQ=255) ccAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAACAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCgg < 2:325942/150‑1 (MQ=255) cAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTTCCTCGAAAAATGCGCCCATCGGCGCAATCCCCCCTGCATCTATTTGCTACACCCCTCCTATGTAGGACCggg > 2:845238/1‑150 (MQ=38) cAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCggg > 1:370745/1‑150 (MQ=255) ttGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCggg > 1:2439814/1‑147 (MQ=255) ttGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCggg < 2:2439814/147‑1 (MQ=255) tAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCcgcg > 2:1220384/1‑150 (MQ=255) ggTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGaa > 1:87449/1‑150 (MQ=255) gTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGa > 1:956573/1‑132 (MQ=255) gTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGa < 2:956573/132‑1 (MQ=255) gTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAAt > 1:102218/1‑150 (MQ=255) ttCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATg < 1:131708/150‑1 (MQ=255) ttCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATg > 2:340674/1‑150 (MQ=255) aaTCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCAc > 1:1575781/1‑93 (MQ=255) aaTCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCAc < 2:1575781/93‑1 (MQ=255) aTCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCa < 1:1141919/150‑1 (MQ=255) tCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAg > 1:1547078/1‑150 (MQ=255) tCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAg > 1:2204645/1‑150 (MQ=255) cTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGc < 2:1904979/103‑1 (MQ=255) cTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGc > 1:1904979/1‑103 (MQ=255) tACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCgg > 2:204609/1‑126 (MQ=255) tACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCgg < 1:204609/126‑1 (MQ=255) acGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGc > 2:296338/1‑99 (MQ=255) acGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGc < 1:296338/99‑1 (MQ=255) acGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGc > 2:8226/1‑150 (MQ=255) aCCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGccac < 2:370745/150‑1 (MQ=255) gcacca‑TGAACGAGGGGCATCTCGCATGAGATGCCCTTTTTGTTTTGGCTCGAAAAATGGGCCCATCGGCGGGATCCCACCTGCGTCTATTTGCCACAGCGACCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGGAGTGCGGccacca > 2:1045336/2‑150 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTAttt < 2:534729/92‑1 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTAttt > 1:534729/1‑92 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGc < 1:1021143/102‑1 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGc > 2:1021143/1‑102 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGccacca > 1:1639927/1‑150 (MQ=255) ccacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCATCGTAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGccacca > 1:1239674/1‑150 (MQ=255) cacca‑TGAACAAAGGGCATCTTGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCCTCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCAt < 2:1208832/150‑1 (MQ=255) cacca‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCAt < 2:2126159/150‑1 (MQ=255) a‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCa < 1:1535511/150‑1 (MQ=255) a‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTAACAAACTGCTCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCa > 2:323846/1‑150 (MQ=255) aaagaaaaaGGGCATCTCATGCGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCa > 1:1107066/7‑150 (MQ=255) aCAAAGGGCAACTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTTCATCTATTTGCAACACCGCCCCTATGTAGAAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTca > 2:414459/1‑150 (MQ=255) cAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTcac > 1:1620577/1‑150 (MQ=255) cAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTcac > 2:1962226/1‑150 (MQ=255) aaGGGCATCTCGCATGATATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAg < 2:1547078/150‑1 (MQ=255) aGGGCATCTCGCATGAGATGCCCTTTgttcatggtgggtcgtgtaggattcgaacctacgaccaattggttaaaagccaactgctctaccaa > 1:1610679‑M1/1‑26 (MQ=255) aGGGCATCTCGCATGAGATGCCCTTTgttcatggtgggtcgtgtaggattcgaacctacgaccaattggttaaaagccaactgctctaccaa < 2:1610679‑M1/92‑67 (MQ=255) cATCTGGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTaaa < 2:319413/150‑1 (MQ=255) aTCTCGCATGAGATGCCCTTTgttcatggtgggtcgtgtaggattcgaacctacgaccaattggttaaaagcc < 1:629971‑M1/73‑53 (MQ=255) aTCTCGCATGAGATGCCCTTTgttcatggtgggtcgtgtaggattcgaacctacgaccaattggttaaaagcc > 2:629971‑M1/1‑21 (MQ=255) aTCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAAc < 2:15647/150‑1 (MQ=255) ctcGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAg > 2:118622/1‑95 (MQ=255) ctcGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAg < 1:118622/95‑1 (MQ=255) ctcGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAAccc > 2:2122149/1‑150 (MQ=255) tcGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAACCcg > 1:981089/1‑150 (MQ=255) tcGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAACCcg > 1:1070857/1‑150 (MQ=255) cATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAAccc < 1:2319858/146‑1 (MQ=255) cATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAAccc > 2:2319858/1‑146 (MQ=255) | TGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCTCACCCCGACCATTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAATCCTACACGACCCACCA‑TGAACAAAGGGCATCTCGCATGAGATGCCCTTTTTCTTTTGCCTCGAAAAATGCGCCCATCGGCGCAATCCCACCTGCATCTATTTGCCACACCGCCCCTATGTAGGAGCGGGTTCACCCGCGAATGCGGCAGTGCAGCCACCATCGCATTCACAGGTAAACCCG > NC_002947/733705‑733998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |