Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 104,318 C→A 6.0% T159T (ACC→ACA)  PP_0099 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947104,3180CA 6.0% 369.2 / 5.3 113T159T (ACC→ACA) PP_0099hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (50/56);  new base A (4/3);  total (54/59)
Fisher's exact test for biased strand distribution p-value = 7.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 117 total aligned reads displayed.

GGCACAGCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTGC  >  NC_002947/104174‑104467
                                                                                                                                                |                                                                                                                                                     
ggCACAGCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGt                                                                                                                                                  >  1:727656/1‑150 (MQ=255)
ggCACAGCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGt                                                                                                                                                  <  1:1759014/150‑1 (MQ=255)
   acaGCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCAc                                                                                                                                               >  2:1493026/1‑150 (MQ=255)
      gCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACCCAGAGCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCaa                                                                                                                                            <  1:1207148/150‑1 (MQ=255)
      gCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCATTCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCaa                                                                                                                                            <  1:1207159/150‑1 (MQ=255)
        aaTTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAgg                                                                                                                                          >  2:908368/1‑150 (MQ=255)
        aaTTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAgg                                                                                                                                          >  1:1298802/1‑150 (MQ=255)
         aTTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAggg                                                                                                                                         <  2:2236710/150‑1 (MQ=255)
             aGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCa                                                                                                                                     >  2:1260250/1‑150 (MQ=255)
               cAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCAcc                                                                                                                                              >  1:54781/1‑139 (MQ=255)
               cAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCAcc                                                                                                                                              <  2:54781/139‑1 (MQ=255)
                 aaCCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTgg                                                                                                                                 <  2:1386048/150‑1 (MQ=255)
                 aaCCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTgg                                                                                                                                 >  2:101945/1‑150 (MQ=255)
                 aaCCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGGTACTGCGTTTTCGTCACCCTGTGACCATTGTCACCCAGGGTTCCCTgt                                                                                                                                 >  2:246908/1‑149 (MQ=255)
                  aCCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGt                                                                                                                                <  2:1764411/150‑1 (MQ=255)
                       gCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGtgctgc                                                                                                                           <  1:1966547/150‑1 (MQ=255)
                       gCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGtgctgc                                                                                                                           <  2:2446852/150‑1 (MQ=255)
                         tACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTgcgc                                                                                                                         <  1:1647384/150‑1 (MQ=255)
                            gtgtGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTCCTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCAATGGTGCTGCGcgac                                                                                                                      <  2:1902237/150‑1 (MQ=255)
                                  gcgcCGATCAATCTGGGCTCCAACACCGACCCGTACCAGTCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACGAAGGGTTCACTGGTGCTGCGcgacctcgac                                                                                                                <  2:1410182/150‑1 (MQ=255)
                                  gcgcCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGcgacctcgac                                                                                                                >  1:1439882/1‑150 (MQ=255)
                                      cgaaaaaTCTGGGCTCCAACACCGACCCGTACCAGCCGAACGAGCGCGAACAGTTACTGACCCGGCGCTTGCCCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACctgc                                                                                                            >  2:147858/6‑150 (MQ=255)
                                      cGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAgg                                                                                                                                          <  1:788223/120‑1 (MQ=255)
                                        aTCAATCTGGGCTCCAACACCGACCCGTACCAGCCGTTCATGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACctgctg                                                                                                          <  2:2018995/150‑1 (MQ=255)
                                        aTCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACctgctg                                                                                                          >  1:1822740/1‑150 (MQ=255)
                                           aaTCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGGTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGcc                                                                                                       >  2:274753/1‑150 (MQ=255)
                                             tCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCga                                                                                                     <  1:668061/150‑1 (MQ=255)
                                               tGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGcgacctcgac                                                                                                                >  2:2189506/1‑137 (MQ=255)
                                               tGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGcgacctcgac                                                                                                                <  1:2189506/137‑1 (MQ=255)
                                               tGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCgaga                                                                                                   <  1:908368/150‑1 (MQ=255)
                                               tGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCgaga                                                                                                   >  1:1229149/1‑150 (MQ=255)
                                                 ggCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATg                                                                                                 <  2:1229149/150‑1 (MQ=255)
                                                    tCCAGCACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTCTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGcc                                                                                              <  2:1188355/150‑1 (MQ=255)
                                                    tCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTCGCCGAGATGGcc                                                                                              <  2:631070/150‑1 (MQ=255)
                                                    tCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACAATGGTCAccg                                                                                                                                             <  2:835440/103‑2 (MQ=255)
                                                    tCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACAATGGTCAccg                                                                                                                                             >  1:835440/1‑102 (MQ=255)
                                                      cAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGcga                                                                                                                       <  1:1169159/123‑1 (MQ=255)
                                                      cAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGcga                                                                                                                       >  2:1169159/1‑123 (MQ=255)
                                                      cAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCTgaga                                                                                                   >  2:1299490/1‑143 (MQ=255)
                                                      cAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCTgaga                                                                                                   <  1:1299490/143‑1 (MQ=255)
                                                       aaCACAGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGc                                                                                           >  1:1612308/1‑150 (MQ=255)
                                                            cGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAgcg                                                                                      >  2:2429879/1‑150 (MQ=255)
                                                            cGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAgcg                                                                                      >  1:1649385/1‑150 (MQ=255)
                                                               cccGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGcca                                                                                   <  2:943815/150‑2 (MQ=255)
                                                                  gTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGccc                                                                                             <  2:1727249/137‑1 (MQ=255)
                                                                   tACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCa                                                                               >  2:1180527/1‑150 (MQ=255)
                                                                      cAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACgg                                                                            <  1:202892/150‑1 (MQ=255)
                                                                      cAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACgg                                                                            <  2:655455/150‑1 (MQ=255)
                                                                        gCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGt                                                                          <  2:906069/150‑1 (MQ=255)
                                                                          cGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGtga                                                                        <  2:1822740/150‑1 (MQ=255)
                                                                           gATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGtgat                                                                       <  2:1310325/150‑1 (MQ=255)
                                                                              cGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTgatgat                                                                    <  2:1439882/150‑1 (MQ=255)
                                                                                  cgcgAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGc                                                                <  1:1195407/150‑1 (MQ=255)
                                                                                      aaCAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGa                                                            <  1:783968/150‑1 (MQ=255)
                                                                                       aCAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGAc                                                           >  1:1855060/1‑150 (MQ=255)
                                                                                        cAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATGAGCCTGAcc                                                          >  1:702509/1‑150 (MQ=255)
                                                                                         aGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCa                                                         >  2:974433/1‑150 (MQ=255)
                                                                                          gTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCAc                                                        >  1:1884013/1‑150 (MQ=255)
                                                                                              cTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTg                                                    >  2:2116869/1‑150 (MQ=255)
                                                                                                 aCCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGtga                                                                        <  1:1110064/127‑1 (MQ=255)
                                                                                                 aCCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGtga                                                                        >  2:1110064/1‑127 (MQ=255)
                                                                                                 aCCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGgac                                                 >  2:651423/1‑150 (MQ=255)
                                                                                                   ccGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCAAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGgacga                                               >  1:1094397/1‑150 (MQ=255)
                                                                                                        gcTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGCCGACGGcc                                          >  2:148713/1‑150 (MQ=255)
                                                                                                             cTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCaaa                                     <  2:1601992/150‑1 (MQ=255)
                                                                                                             cTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCaaa                                     <  2:1884013/150‑1 (MQ=255)
                                                                                                              tCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAAc                                    >  1:2403147/1‑150 (MQ=255)
                                                                                                              tCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAAc                                    >  1:1295006/1‑150 (MQ=255)
                                                                                                              tCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAAc                                    >  1:1787820/1‑150 (MQ=255)
                                                                                                              tCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAAc                                    >  2:1968277/1‑150 (MQ=255)
                                                                                                                  aGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGAGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGt                                <  2:1298802/150‑1 (MQ=255)
                                                                                                                     gtTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGc                                                                <  1:2278521/115‑1 (MQ=255)
                                                                                                                     gtTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGc                                                                >  2:2278521/1‑115 (MQ=255)
                                                                                                                      ttACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTc                            >  1:450592/1‑150 (MQ=255)
                                                                                                                         cTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGaa                         <  1:1180527/150‑1 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGc                                                                >  2:550668/1‑110 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGc                                                                <  1:550668/110‑1 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAc                        >  1:1675816/1‑150 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAc                        <  2:1612308/150‑1 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAc                        <  1:2116869/150‑1 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAc                        <  2:1295006/150‑1 (MQ=255)
                                                                                                                          tGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAc                        <  2:152301/150‑1 (MQ=255)
                                                                                                                            cGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAAccc                      <  1:2334296/150‑1 (MQ=255)
                                                                                                                                    tCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGagcagc              >  2:44538/1‑150 (MQ=255)
                                                                                                                                      aCCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGc                                           >  2:711732/1‑119 (MQ=255)
                                                                                                                                      aCCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCt            >  2:1547287/1‑150 (MQ=255)
                                                                                                                                      aCCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCt            <  1:1493026/150‑1 (MQ=255)
                                                                                                                                        ttggTGACAATGGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGgac                                                 >  1:2342503/3‑111 (MQ=255)
                                                                                                                                        ttggTGACAATGGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCa          >  1:753509/3‑150 (MQ=255)
                                                                                                                                        ccGGTGACCATTGTCACCAAGGGTTCACTGGTGCTgcgc                                                                                                                         >  2:235302/1‑39 (MQ=255)
                                                                                                                                        ccGGTGACCATTGTCACCAAGGGTTCACTGGTGCTgcgc                                                                                                                         <  1:235302/39‑1 (MQ=255)
                                                                                                                                        ccGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCa          >  1:204805/1‑150 (MQ=255)
                                                                                                                                         cGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCCCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCAc         >  2:2069265/1‑150 (MQ=255)
                                                                                                                                          ggTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCAcc        <  1:2068742/150‑1 (MQ=255)
                                                                                                                                          ggTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCCCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCAcc        <  1:2069265/150‑1 (MQ=255)
                                                                                                                                           gTGACAATGGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCAccc       >  1:1189544/1‑150 (MQ=255)
                                                                                                                                               ccATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTg   <  2:2291958/150‑1 (MQ=255)
                                                                                                                                               ccATTGTCACC‑AGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTGc  <  1:2202998/150‑1 (MQ=255)
                                                                                                                                                cATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTGc  >  1:1735132/1‑150 (MQ=255)
                                                                                                                                                cATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCCCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTGc  >  2:1866477/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
GGCACAGCAATTGAGCAAACCGGGCTACGTGTGCGCGCCGATCAATCTGGGCTCCAACACCGACCCGTACCAGCCGATCGAGCGCGAACAGTTACTGACCCGGCGCTTGCTCGAAGTGTTACTGCGTTTTCGTCACCCGGTGACCATTGTCACCAAGGGTTCACTGGTGCTGCGCGACCTCGACCTGCTGGCCGAGATGGCCCGCCAGCGCCTGGCACGGGTGATGATCAGCCTGACCACGCTGGACGACGGCCTCAAACGGGTGCTCGAACCCCGAGCAGCCTCACCCGGTGC  >  NC_002947/104174‑104467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑