| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 161,688 | C→T | 5.5% | intergenic (‑183/+63) | PP_0152 ← / ← PP_0153 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 161,688 | 0 | C | T | 5.5% | 265.4 / 2.7 | 90 | intergenic (‑183/+63) | PP_0152/PP_0153 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (44/41); new base T (3/2); total (47/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
TTAGGCCAAGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGC > NC_002947/161539‑161837 | ttAGGCCAAGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGc > 1:69431/1‑150 (MQ=255) gCCAAGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCa < 1:933376/150‑1 (MQ=255) gCCAAGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCa < 1:1920991/150‑1 (MQ=255) aaGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTTAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑Tc > 1:2436352/1‑150 (MQ=255) gTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTTAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCt < 2:2436352/150‑1 (MQ=255) gTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGACATATCGGTAAATCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCt > 2:62965/1‑150 (MQ=255) tATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTg > 1:397939/1‑150 (MQ=255) aTCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCTTACAATAAAAA‑CCCCGCTGCAG‑TCACCTGc < 1:62965/150‑1 (MQ=255) cAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGTGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAAcggg > 1:1729371‑M2/1‑146 (MQ=255) tgctggGTAGAGATGCCAACGACTGCTGTGCCAGCCACCTGTTTAGGTGTGTTTTATTTGTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAAcgggttt > 2:2230484‑M2/1‑143 (MQ=255) gctgcGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGTTGCAG‑GTGACTGCAGcgggtttt > 1:2340749‑M2/1‑142 (MQ=255) ctgcGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCCACCCACACCAGCGT‑ACTCGGGCAATAATAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTga > 2:64290/1‑150 (MQ=255) ctgcGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTga < 1:433070/150‑1 (MQ=255) ctgcGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTga < 2:397939/150‑1 (MQ=255) gagaTGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTc > 2:1976632/1‑150 (MQ=255) agaTGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGc > 2:782948/1‑118 (MQ=255) agaTGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGc < 1:782948/118‑1 (MQ=255) gACAACGACTGCTGTGCCAGACAACTGTGAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGt < 2:2304812/150‑1 (MQ=255) cAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGTTGCAG‑GTGACTGCAGcgggttttttattgcccgagaga < 1:731288‑M2/150‑24 (MQ=255) aaCGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTga < 1:980876/135‑1 (MQ=255) aaCGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTga > 2:980876/1‑135 (MQ=255) aaCGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGcc > 1:2422708/1‑150 (MQ=255) aaCGACTGCTGTGCCAGAAAAGTGTTACGGCGAATTTTAATTTTTGTAAAACTGGACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGcc > 2:1845320/1‑150 (MQ=255) aCTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCTGCg > 2:169656/1‑150 (MQ=255) ctgctgTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGTTGCAG‑GTGACTGCAGcgggttttttattgcccgagagacgcgca > 2:731288‑M2/1‑121 (MQ=255) tgctgTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGaa > 1:1703635/1‑150 (MQ=255) aGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAg > 1:1493807/1‑150 (MQ=255) aaCTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCTG‑CGTCCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCgg < 1:169656/150‑1 (MQ=255) cTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGa < 1:2215359/150‑1 (MQ=255) tGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGCGCCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCGGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAg < 1:1204204/150‑1 (MQ=255) aGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAg > 1:1261770/1‑150 (MQ=255) aGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAg > 1:172889/1‑150 (MQ=255) ggCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAgc < 2:1081325/150‑1 (MQ=255) gCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGa > 2:991225/1‑142 (MQ=255) gCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGa < 1:991225/142‑1 (MQ=255) attttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGt > 1:70940/1‑108 (MQ=255) attttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGt < 2:70940/108‑1 (MQ=255) tttttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCt < 2:1128805/150‑1 (MQ=255) ttttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCtt > 1:2373322/1‑150 (MQ=255) ataacccTGTACGGGTCCCAATCTGAAGCGCGCGACTGC‑GCGCCTCTCGGGAAATAAAAC‑CCCCGCTGCAG‑TCACCTCAAACGGGTTTGAGAAATTCACGGTCCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTc < 2:2373322/144‑1 (MQ=255) tAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCt > 2:1202420/1‑76 (MQ=255) tAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCt < 1:1202420/76‑1 (MQ=255) aaaNTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGc > 2:1516453/1‑150 (MQ=255) aaaCTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGc < 1:2280672/150‑1 (MQ=255) aaCTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGct > 2:613279/1‑150 (MQ=255) tGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGTTGCAGGTGAC‑TGCAGcgggttttttattgcccga > 2:2436394‑M2/1‑69 (MQ=255) tGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGTTGCAGGTGAC‑TGCAGcgggttttttattgcccga < 1:2436394‑M2/88‑20 (MQ=255) gTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACg > 1:1807565/1‑150 (MQ=255) tCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGc < 1:1412041/129‑1 (MQ=255) tCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGc > 2:1412041/1‑129 (MQ=255) gCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTAAGCCATTCGTAACGCTg > 2:661722/1‑150 (MQ=255) cAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGc < 1:1372393/150‑1 (MQ=255) aaTCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGTGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCg > 2:2202266/1‑150 (MQ=255) aaTCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCg > 1:1974306/1‑150 (MQ=255) tCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGAc > 2:254503/1‑150 (MQ=255) gAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCg > 2:819709/1‑150 (MQ=255) aaGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGc < 1:1775338/150‑1 (MQ=255) gCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTg > 1:296904/1‑150 (MQ=255) aCGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGAt > 1:478149/1‑150 (MQ=255) cgcgACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATa < 1:2311014/150‑1 (MQ=255) cgcgACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATa < 1:2022544/150‑1 (MQ=255) cgcgACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATa < 1:1997312/150‑1 (MQ=255) gcgACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATAc > 1:1605432/1‑150 (MQ=255) gcgACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATAc > 1:426414/1‑150 (MQ=255) gACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCg < 2:172889/150‑1 (MQ=255) gACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCg > 1:1949982/1‑150 (MQ=255) gACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGCGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCg < 2:1261770/150‑1 (MQ=255) cTGC‑GCGTGTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGAAAGGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGc < 2:1703635/150‑1 (MQ=255) cTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGc < 2:1974306/150‑1 (MQ=255) gcgTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCt < 1:1060262/150‑1 (MQ=255) gcgTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCt > 1:1554553/1‑150 (MQ=255) gcgTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCt > 2:734217/1‑150 (MQ=255) gTCTCT‑GGGCAAAAAAAACCCCCGCGGCGG‑TCCCCTGAAAGGGGTTTGAGAAATTCCGGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGc < 2:1807565/150‑1 (MQ=255) ctctcGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCca < 1:734217/150‑1 (MQ=255) tcGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCtt > 1:2071877/1‑111 (MQ=255) tcGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCtt < 2:2071877/111‑1 (MQ=255) gCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCg > 2:2450311/1‑150 (MQ=255) gCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCg < 1:1976632/150‑1 (MQ=255) cAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 1:1516453/150‑1 (MQ=255) aTAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 2:296904/150‑1 (MQ=255) tAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCt > 1:1209329/1‑95 (MQ=255) tAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCt < 2:1209329/95‑1 (MQ=255) aaaa‑aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGc < 2:2161427/88‑1 (MQ=255) aaaa‑aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGc > 1:2161427/1‑88 (MQ=255) aaa‑aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGGTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTcc > 1:882205/1‑150 (MQ=255) aaa‑aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTcc > 1:934768/1‑150 (MQ=255) aa‑aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCa < 2:69431/150‑1 (MQ=255) aCCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAgg > 1:960766/1‑150 (MQ=255) ccGCTGCAG‑TCACCTGCAAcgggttttttattgcccgagagacgcgcagtcgcgtgcttcagattgcgaccagtacagttttacaaaaattaaaattcgccttaacagttgtctggcacagcagtcgttgtcatctctacgcagcactgc < 1:288034‑M2/150‑132 (MQ=255) ccGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCg > 2:1669855/1‑150 (MQ=255) cGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAACCTGTGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGa < 1:1845320/150‑1 (MQ=255) gCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGc > 1:640747/1‑111 (MQ=255) gCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGc < 2:640747/111‑1 (MQ=255) cTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGc > 2:1211137/1‑150 (MQ=255) | TTAGGCCAAGCGTATCACGCAGTGCTGCGTAGAGATGACAACGACTGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGC‑GCGTCTCTCGGGCAATAAAAA‑ACCCGCTGCAG‑TCACCTGCAACGGGTTTGAGAAATTCACGGTGCCGGCGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGC > NC_002947/161539‑161837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |