| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,275,090 | G→C | 7.0% | intergenic (‑281/+31) | PP_5462 ← / ← PP_5463 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,275,090 | 0 | G | C | 7.0% | 264.9 / 10.0 | 87 | intergenic (‑281/+31) | PP_5462/PP_5463 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (35/45); new base C (2/4); total (37/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.36e-01 | |||||||||||
AGTGCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTCGT > NC_002947/1274944‑1275239 | aGTGCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATg < 2:765313/150‑1 (MQ=255) tGCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGCCCGCGCTTTGTGCCCGGTTACGTCGGCTCCACTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATggg < 1:535075/150‑1 (MQ=255) cGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcg < 1:733793/150‑1 (MQ=255) aaTNGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGCTGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcggg > 2:1520326/1‑150 (MQ=255) aaTGGGCATTTTGGTCTATCCGGCGGAGAGTGAATCTCGAAGCCTGCTCCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcggg < 1:1329311/150‑1 (MQ=255) ggCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCttt < 1:1763303/150‑2 (MQ=255) cATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCtttgc < 2:2280092/150‑4 (MQ=255) aTTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGACTCCAGTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gg > 1:813564/1‑150 (MQ=255) ttttGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTTAAAGGAGAATGAGCAAAGCCCGCCGATgggcgg > 2:765478/1‑141 (MQ=255) ttttGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTTAAAGGAGAATGAGCAAAGCCCGCCGATgggcgg < 1:765478/141‑1 (MQ=255) ttttGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑ggg > 2:1748543/1‑150 (MQ=255) tttGGTCTATTCGGCGGAGAGCGAATGTTGGAGCCTGCTTCAAGGTTTCGTCGGCTTCGTTACGGGGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggg < 2:1084217/150‑1 (MQ=255) ttGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑ggggg < 2:1578441/150‑1 (MQ=255) gTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggggg > 2:2163704/1‑150 (MQ=255) aTCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCG‑GGGGGGGGCAGa > 2:1960435/1‑150 (MQ=255) tCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGaa > 2:1625974/1‑150 (MQ=255) ccGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAg < 2:1986087/150‑1 (MQ=255) ggcggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg < 2:2304026/150‑1 (MQ=255) ggcggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg < 1:2163704/150‑1 (MQ=255) gcggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGc > 2:1246157/1‑150 (MQ=255) ttGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCATTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGAGGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCATATTGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGta < 2:813564/149‑1 (MQ=255) tGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtac < 2:382234/150‑1 (MQ=255) tGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGNGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtac > 1:1404404/1‑150 (MQ=255) aaTGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCACCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtacta < 2:1553193/150‑1 (MQ=255) tGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACg < 1:670809/150‑1 (MQ=255) gccGAAGCCTGGTGCCCGGTTACGTCGGCTCCAATAAGGTGCGGGGGAGCGGTAATGATGGGGGTGATGGTAGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACgg < 1:2190909/148‑1 (MQ=255) gTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGGGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACgg < 2:1404404/150‑1 (MQ=255) gTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGGGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACgg < 2:496918/150‑1 (MQ=255) cTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTtct > 1:825691/1‑150 (MQ=255) tGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGTGCTATCGTACTACGGTCGCTtctc < 1:1520326/150‑1 (MQ=255) tGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGACCAGGGCGTAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTtctc > 1:42375/1‑150 (MQ=255) ttCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTc > 1:2360361/1‑150 (MQ=255) ttCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTc > 2:1034545/1‑150 (MQ=255) tCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg > 2:302480/1‑113 (MQ=255) tCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg < 1:302480/113‑1 (MQ=255) ccGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCg < 2:737222/127‑1 (MQ=255) ccGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCg > 1:737222/1‑127 (MQ=255) gTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg > 2:1404973/1‑118 (MQ=255) gTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg < 1:1404973/118‑1 (MQ=255) aCGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGAGGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAg < 2:1156204/150‑1 (MQ=255) cGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAAGGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAgg < 2:353212/150‑1 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGc > 2:2418625/1‑130 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGc < 1:2418625/130‑1 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTa < 1:2086436/150‑1 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCt < 1:1673594/93‑1 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCt > 2:1673594/1‑93 (MQ=255) cTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGaa > 2:1610246/1‑150 (MQ=255) cTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGaa < 2:825691/150‑1 (MQ=255) tCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg > 2:726335/1‑97 (MQ=255) tCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg < 1:726335/97‑1 (MQ=255) cAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCa > 1:477005/1‑150 (MQ=255) aaTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGaaa < 2:634257/138‑1 (MQ=255) aaTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGaaa > 1:634257/1‑138 (MQ=255) aaGTTGCGGGATAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccg > 2:1913440/1‑150 (MQ=255) ggTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCGCCGAAAGGTAGGAAGCAcccgcc < 1:1748543/150‑1 (MQ=255) ggTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccgcc < 1:1034545/150‑1 (MQ=255) tGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccgcccg < 2:170095/150‑1 (MQ=255) cGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCtt > 1:411896/1‑77 (MQ=39) cGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCtt < 2:411896/77‑1 (MQ=39) ggAGAGCGGTAATGAAGGGGGTATTGGTGGCAAAGGGGGAAGAAATATGGGCAAGTCCCGGCGATGGGCGGGCTGCA‑GTGGGGGGCAGGAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCAct > 2:2104375/1‑150 (MQ=255) agagCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActcc < 2:477005/150‑1 (MQ=255) gTAGTGAGGGGGGGGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACCGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 2:2307718/150‑1 (MQ=255) gTAATGGTGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 2:2307667/150‑1 (MQ=255) gTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTACACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 1:1625974/150‑1 (MQ=255) tAATGAGGGGGGTGATGGTGGTAAAGGTGAAAGTAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCAGGGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 1:87397/150‑1 (MQ=255) atgGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATc > 1:1290326/1‑150 (MQ=255) ggggTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCa > 2:195468/1‑104 (MQ=255) ggggTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCa < 1:195468/104‑1 (MQ=255) ggggTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCa > 2:1267033/1‑150 (MQ=255) tggtggTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCACAAGGGATATGGAACTCCGGTCGCTTCAAGACCACGGTAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAg < 1:1486282/150‑1 (MQ=255) ggtggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAgg > 2:802586/1‑150 (MQ=255) gtggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGt < 1:1246157/150‑1 (MQ=255) ggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGa > 2:1157681/1‑150 (MQ=255) gtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGc > 1:293712/1‑82 (MQ=255) gtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGc < 2:293712/82‑1 (MQ=255) aaaGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCGACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTGTCAGGTGACTg > 1:490485/1‑150 (MQ=255) aaaGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTa > 2:1331457/1‑93 (MQ=255) aaaGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTa < 1:1331457/93‑1 (MQ=255) aaGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGa < 1:1267033/150‑1 (MQ=255) gagaATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGGAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATTGCACTGTAAGGTCACTGCCTTTGGTTaa < 2:1856361/150‑1 (MQ=255) gagaATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATaa < 1:465385/150‑1 (MQ=255) aaTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGtt < 2:2360361/150‑1 (MQ=255) aTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGtcg > 1:2137693/1‑148 (MQ=255) aGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTAt > 1:1341083/1‑150 (MQ=255) cAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAg > 2:953475/1‑77 (MQ=255) cAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAg < 1:953475/77‑1 (MQ=255) aaaGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCa > 2:1121353/1‑150 (MQ=255) ccgccgATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTg < 2:288340/150‑1 (MQ=255) ccgccgATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTg < 2:281717/150‑1 (MQ=255) gccgATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActcc > 2:1095729/1‑93 (MQ=255) gccgATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActcc < 1:1095729/93‑1 (MQ=255) gATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTCGt > 1:872747/1‑150 (MQ=255) | AGTGCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTCGT > NC_002947/1274944‑1275239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |