| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,504,076 | T→A | 8.3% | intergenic (+34/‑229) | rpsI → / → petA | 30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,504,076 | 0 | T | A | 8.3% | 318.9 / 16.8 | 111 | intergenic (+34/‑229) | rpsI/petA | 30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit |
| Reads supporting (aligned to +/- strand): ref base T (57/43); new base A (4/5); total (62/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
CCCTGCGTGGCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGACG > NC_002947/1503927‑1504225 | cccTGCGTGGCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCt < 1:2030741/150‑1 (MQ=255) ccTGCGTGGCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCtt > 2:1924475/1‑150 (MQ=255) ccTGCGTGGCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCtt < 2:58788/150‑1 (MQ=255) ggCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCg < 2:409900/150‑1 (MQ=255) gcgcTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCgg < 2:174851/150‑1 (MQ=255) tgcTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCAAGGAACCggg < 1:1261583/149‑1 (MQ=255) cgcTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCAAGGAACCggg < 1:945227/150‑1 (MQ=255) ctctGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCTTTAATACCGCTTCGGCAGTCGAAAAAAGCCCAGTTCCACGGAACCGGGca > 2:1261583/1‑149 (MQ=255) tctGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCAAGGAACCGGGCtt < 2:2446258/150‑1 (MQ=255) tcgtGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCtttttttt > 2:933158/1‑150 (MQ=255) gcgggCGACGTGACCGGCGACGCTCGTGAAGTTGAGCGGAAGAAGGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTATTCATGGTCCTGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGc < 1:1995024/147‑1 (MQ=255) gCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAGGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGc < 1:1451448/150‑1 (MQ=255) tACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGaa > 1:161226/1‑150 (MQ=255) tACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGaa > 1:574374/1‑150 (MQ=255) tACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTCGaa > 2:1406809/1‑150 (MQ=255) cACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc < 2:574374/150‑1 (MQ=255) gcgACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc > 1:501470/1‑145 (MQ=255) gcgACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc < 2:501470/145‑1 (MQ=255) cgACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTca < 1:1406809/150‑1 (MQ=255) gAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc > 2:1298430/1‑134 (MQ=255) gAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc > 2:1298269/1‑134 (MQ=255) gAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc < 1:1298430/134‑1 (MQ=255) gAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAAc < 1:1298269/134‑1 (MQ=255) tGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGc < 1:847776/150‑1 (MQ=255) cGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGt > 2:2364683/1‑150 (MQ=255) cGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGt > 2:1196359/1‑150 (MQ=255) gTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCTGCTTGTc < 2:161226/150‑1 (MQ=255) aaGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCTGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGc > 2:1150715/1‑150 (MQ=255) aGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTACGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCa > 2:935257/1‑150 (MQ=255) gAATGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCAt > 2:1704860/1‑150 (MQ=255) gTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCgg > 1:84081/1‑87 (MQ=255) tCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCTGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGa < 1:1150715/150‑1 (MQ=255) gCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGaa > 1:2008605/1‑103 (MQ=255) tAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGc < 2:1937566/150‑1 (MQ=255) aaGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCaa > 2:906969/1‑150 (MQ=255) aGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCaaa < 1:1270876/150‑1 (MQ=255) aGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGt > 1:1014911/1‑150 (MQ=255) tCCTCAGTACTCCAAGCCTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTc < 1:2066514/150‑1 (MQ=255) cTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATTGACAGAAACCAAGCAAAGCGTGGGTTGTCGc > 1:1819046/1‑150 (MQ=255) cTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGc > 1:677250/1‑150 (MQ=255) cTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGc > 1:954819/1‑150 (MQ=255) cTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGc > 2:1888768/1‑150 (MQ=255) cTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCAAGGAACCggg > 1:974508/1‑64 (MQ=37) tCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGa < 2:2438721/81‑1 (MQ=255) tCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGa > 1:2438721/1‑81 (MQ=255) aGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCt > 2:2123185/1‑150 (MQ=255) gTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCtt < 1:2412835/76‑1 (MQ=255) aCTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGc > 2:1708929/1‑150 (MQ=255) aCTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGc > 2:2118776/1‑150 (MQ=255) tCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAGACAG‑CAGTGGCCGCTCCTTACATTGGAGTGGAGCAAGAGAAGCGTGGGCTTTCTCCCTTTCCg > 2:146260/1‑150 (MQ=255) tCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCg > 2:306523/1‑150 (MQ=255) tCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTGCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCAGCATGTCGCATAGGCGGATATCAATCAAAGCGTGGGTTGTCGCCCTTGACg > 2:1592830/1‑150 (MQ=255) tCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGACCGGTTACTTGGAACGTGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTGGATCAAGCAAAGCGTGGGGTGTCGCCCTTGCCg > 1:661809/1‑150 (MQ=255) ccAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCgg < 1:1924475/150‑1 (MQ=255) ccAAGCGTTAATACCGCTACGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCgg < 1:935257/150‑1 (MQ=255) cAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCggg < 1:1704860/150‑1 (MQ=255) cAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCggg > 2:1494617/1‑150 (MQ=255) cAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAAACCGATTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCggg > 1:1995684/1‑150 (MQ=255) aaGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCgggg > 1:2054788/1‑150 (MQ=255) aaGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCgggg > 2:1469503/1‑150 (MQ=255) cgCGTTAAGACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGt < 2:1995684/149‑1 (MQ=255) cGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTaa < 1:2364683/150‑1 (MQ=255) ttAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATc > 2:945798/1‑150 (MQ=255) aaTACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCAc < 2:1014911/150‑1 (MQ=255) aaTACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCAc > 2:2133824/1‑150 (MQ=255) aCCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCtt > 1:2099170/1‑150 (MQ=255) aCCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGCTAATCACCtt < 2:2242384/150‑1 (MQ=255) ccGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGAc > 2:166452/1‑100 (MQ=255) ggCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAgtgt < 2:1571754/150‑1 (MQ=255) ggCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAgtgt < 1:933158/150‑1 (MQ=255) cAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCCTAGCCTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAgtgtgt < 1:146260/150‑1 (MQ=255) aGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAA‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAg > 2:2251294/1‑100 (MQ=255) tCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAgtgt < 1:2306386/145‑1 (MQ=255) tCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAgtgt > 2:2306386/1‑145 (MQ=255) tCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGa > 2:2326082/1‑150 (MQ=255) aaaaaaGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGAttt > 2:1487063/1‑150 (MQ=255) cccGGTTCCTTGGAACCGGGCTTTTTTTTTTTTTTTTTACTAACCTGTCAG‑CAGTCAGTTGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTTGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTTTGTTGGTTTGTTTCtt > 2:1016140/1‑150 (MQ=255) cccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCtt > 2:1016006/1‑150 (MQ=255) cccGGTTCCAAGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTg > 1:58596/1‑128 (MQ=255) cccGGTTCCAAGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTg < 2:58596/128‑1 (MQ=255) ccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTTAACTAACCTGTCAG‑CAGTCAGTGTCCGCTTGTCGCTTAGACGTAAATCAAGCAAAGCGTGGGTTGTCTATCTTGACGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCttt > 2:744487/1‑149 (MQ=255) ccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCggg > 2:1794071/1‑115 (MQ=255) ccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCggg < 1:1794071/115‑1 (MQ=255) ccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTa > 2:1070948/1‑150 (MQ=255) ccGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTa < 1:1585607/150‑1 (MQ=255) ccGGTTCCAAGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTa > 1:1884594/1‑150 (MQ=255) cGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTcag‑ca > 2:2048134/1‑51 (MQ=255) cGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTcag‑ca > 2:2047995/1‑51 (MQ=255) cGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTcag‑ca < 1:2047995/51‑1 (MQ=255) cGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTcag‑ca < 1:2048134/51‑1 (MQ=255) cGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTAc < 1:2109419/150‑1 (MQ=255) ccTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGa > 1:1506902/1‑150 (MQ=255) cTTGGACACGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGAc < 2:600294/150‑1 (MQ=255) cTTGGAACCGGGCTTTTTTTTTTTTTTTTTACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGAc > 2:1298354/1‑150 (MQ=255) cTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCa > 2:681675/1‑123 (MQ=255) cTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCa < 1:681675/123‑1 (MQ=255) ttGGAACCGGGCTTTTTTTTTAGCCTTTAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGACg > 2:846781/1‑150 (MQ=255) ttGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGcc < 2:2235881/104‑1 (MQ=255) ttGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGcc > 1:2235881/1‑104 (MQ=255) ttGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGACg > 1:428062/1‑150 (MQ=255) | CCCTGCGTGGCGCTCTGCGTCGTGCTGGCTACGTCACCCGCGACGCTCGTGAAGTTGAGCGTAAGAAAGTGGGTCTGCGTAAAGCGCGTAAGCGTCCTCAGTACTCCAAGCGTTAATACCGCTTCGGCAGTCGAAAAAAGCCCGGTTCCTTGGAACCGGGCTTTTTTTTTAGCCTTGAACTAACCTGTCAG‑CAGTCAGTGGCCGCTTGTCGCATAGACGTAGATCAAGCAAAGCGTGGGTTGTCGCCCTTGCCGGGGTAATCACCTTGTCAGTGTGTGGATTTGTTTCTTACCATGACG > NC_002947/1503927‑1504225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |