Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,661,522 T→A 8.6% L51Q (CTG→CAG)  PP_1456 → membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,661,5220TA 8.6% 328.3 / 15.8 104L51Q (CTG→CAG) PP_1456membrane protein
Reads supporting (aligned to +/- strand):  ref base T (48/47);  new base A (4/5);  total (52/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 106 total aligned reads displayed.

TTCTATCTGATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGACCGCCTGT  >  NC_002947/1661374‑1661668
                                                                                                                                                    |                                                                                                                                                  
ttCTATCTGATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTg                                                                                                                                                   >  1:606627/1‑150 (MQ=255)
   tATCTGATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTc                                                                                                                                                >  2:247544/1‑150 (MQ=255)
    aTCTGATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCg                                                                                                                                               >  2:17525/1‑150 (MQ=255)
        gATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCAt                                                                                                                                           >  2:762788/1‑150 (MQ=255)
        gATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGCCAt                                                                                                                                           <  1:333019/150‑1 (MQ=255)
          ttGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGCCATga                                                                                                                                         <  2:395400/150‑2 (MQ=255)
            gCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtg                                                                                                                                       <  1:1810631/150‑1 (MQ=255)
             ccTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtgg                                                                                                                                      <  1:1093616/150‑1 (MQ=255)
              cTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTTCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtggt                                                                                                                                     <  1:1321061/150‑1 (MQ=255)
              cTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtggt                                                                                                                                     >  2:1469144/1‑150 (MQ=255)
              cTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtggt                                                                                                                                     >  2:653388/1‑150 (MQ=255)
              cTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtggt                                                                                                                                     <  2:773072/150‑1 (MQ=255)
               tACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCtggtg                                                                                                                                    >  2:2386555/1‑150 (MQ=255)
                 cATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGc                                                                                                                                  >  1:865184/1‑150 (MQ=255)
                   tCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCAc                                                                                                                                >  2:2071115/1‑150 (MQ=255)
                      gcagcGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTgg                                                                                                                             <  1:487489/150‑1 (MQ=255)
                       cagcGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGt                                                                                                                            <  1:653388/150‑1 (MQ=255)
                         gcGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGTGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGc                                                                                                                          >  1:1666214/1‑150 (MQ=255)
                             aGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTc                                                                                                                      <  2:1706954/150‑1 (MQ=255)
                             aGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTc                                                                                                                      <  1:114583/150‑1 (MQ=255)
                               tGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGCCATga                                                                                                                                         <  2:2343951/129‑2 (MQ=255)
                                gCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTa                                                                                                                   <  1:956666/150‑1 (MQ=255)
                                 cTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTAt                                                                                                                  <  2:805017/150‑1 (MQ=255)
                                  tGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATg                                                                                                                 >  1:1245493/1‑150 (MQ=255)
                                   gATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTa                                                                                                                   >  1:1965849/1‑147 (MQ=255)
                                   gATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTa                                                                                                                   <  2:1965849/147‑1 (MQ=255)
                                            cGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGa                                                                                                       <  1:2071115/150‑1 (MQ=255)
                                             gCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTg                                                                                                                           <  2:225888/129‑1 (MQ=255)
                                             gCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTg                                                                                                                           >  1:225888/1‑129 (MQ=255)
                                             gCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAg                                                                                                      >  1:2170906/1‑150 (MQ=255)
                                              ccTTCTCCAGTGCCCCGCATCTGGACATCATCGGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGc                                                                                                     >  1:438339/1‑150 (MQ=255)
                                               cTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATACTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGACATCCTATGTCACGTCGGAGcc                                                                                                    >  1:122738/1‑150 (MQ=255)
                                                     cAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCAt                                                                                              >  1:242169/1‑150 (MQ=255)
                                                         gCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGcc                                                                                          <  1:1676597/150‑1 (MQ=255)
                                                                 tCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAg                                                                                  >  1:2453254/1‑150 (MQ=255)
                                                                  cTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAgc                                                                                 <  1:987382/150‑1 (MQ=255)
                                                                    ggACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGTGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTTTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAgcgc                                                                               >  1:1563723/1‑150 (MQ=255)
                                                                      aCATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATTGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCa                                                                             >  2:1183546/1‑150 (MQ=255)
                                                                      aCATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCa                                                                             <  2:865184/150‑1 (MQ=255)
                                                                        atcatcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTc                                                                                                                      <  2:1151213/107‑1 (MQ=255)
                                                                        atcatcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTc                                                                                                                      >  1:1151213/1‑107 (MQ=255)
                                                                        atcatcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGGCATga                                                                                                                                         >  2:1306946/1‑87 (MQ=255)
                                                                        atcatcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGCCATga                                                                                                                                         <  1:1306946/88‑2 (MQ=255)
                                                                            tcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGt                                                                       >  1:479878/1‑150 (MQ=255)
                                                                            tcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGt                                                                       <  1:1408405/150‑1 (MQ=255)
                                                                            tcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGt                                                                       >  2:2389059/1‑150 (MQ=255)
                                                                            tcTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGt                                                                       >  1:1220558/1‑150 (MQ=255)
                                                                             cTGGTCTGCCTGGGGCGGCCTGGTCTTCATCCTGCGCGACATGGTGCAGTCCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGtt                                                                      <  2:537172/150‑1 (MQ=255)
                                                                              tGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttc                                                                     <  1:1469144/150‑1 (MQ=255)
                                                                              tGGTCTGCCTGGGGCGGCCTGGTGTTAGAACGGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttc                                                                     >  1:63250/1‑150 (MQ=255)
                                                                                gTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttctt                                                                   >  1:1821362/1‑150 (MQ=255)
                                                                                 tCTGCCTGTGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttcttc                                                                  <  2:1666214/150‑1 (MQ=255)
                                                                                 tCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTc                                                                                                               >  2:1516332/1‑105 (MQ=255)
                                                                                 tCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTc                                                                                                               <  1:1516332/105‑1 (MQ=255)
                                                                                     ccTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCAttt                                                              >  1:725899/1‑150 (MQ=255)
                                                                                      cTGGGGCGGCCTGGTGTTCATCCTGCGCGACGTGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTc                                                             <  2:1245493/150‑1 (MQ=255)
                                                                                         gggCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGa                                                          <  1:762788/150‑1 (MQ=255)
                                                                                         gggCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGa                                                          <  2:2082172/150‑1 (MQ=255)
                                                                                          ggcggcCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAg                                                         <  2:606627/150‑1 (MQ=255)
                                                                                                cTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCt                                                                                                                                        <  1:1955940/65‑1 (MQ=255)
                                                                                                cTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCt                                                                                                                                        >  2:1955940/1‑65 (MQ=255)
                                                                                                cTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCatat                                                                                                                  <  1:680257/87‑1 (MQ=255)
                                                                                                cTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCatat                                                                                                                  >  2:680257/1‑87 (MQ=255)
                                                                                                      ttCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTAGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActgg                                             >  1:1358337/1‑150 (MQ=255)
                                                                                                       tCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATTGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActggc                                            <  1:1183546/150‑1 (MQ=255)
                                                                                                       tCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActggc                                            <  2:850976/150‑1 (MQ=255)
                                                                                                        cATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActggct                                           >  2:47353/1‑150 (MQ=255)
                                                                                                           ccTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGgt                                        <  1:466053/150‑1 (MQ=255)
                                                                                                           ccTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGgt                                        >  1:162678/1‑150 (MQ=255)
                                                                                                            cTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGgtg                                       >  2:263249/1‑150 (MQ=255)
                                                                                                            cTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGgtg                                       >  2:224146/1‑150 (MQ=255)
                                                                                                            cTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGACCAGGGCGCCATga                                                                                                                                         <  2:770188/52‑2 (MQ=21)
                                                                                                              gcgcGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGAct                                               >  2:2054443/1‑140 (MQ=255)
                                                                                                              gcgcGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGAct                                               <  1:2054443/140‑1 (MQ=255)
                                                                                                                gcgACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCa                                   <  2:2110776/150‑1 (MQ=255)
                                                                                                                      tGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTAGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCa                             <  2:2170906/150‑1 (MQ=255)
                                                                                                                       ggTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCAc                            <  1:1687076/150‑1 (MQ=255)
                                                                                                                          gCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCg                         >  1:2305695/1‑150 (MQ=255)
                                                                                                                            aGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCTGCCATAGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTc                       <  1:2386555/150‑1 (MQ=255)
                                                                                                                            aGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTc                       <  1:842749/150‑1 (MQ=255)
                                                                                                                            aGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTc                       <  2:2305695/150‑1 (MQ=255)
                                                                                                                               cccGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCa                                   <  2:2196544/135‑1 (MQ=255)
                                                                                                                               cccGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCa                                   >  1:2196544/1‑135 (MQ=255)
                                                                                                                                ccGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttc                                                                     >  1:230640/1‑100 (MQ=255)
                                                                                                                                ccGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGttc                                                                     <  2:230640/100‑1 (MQ=255)
                                                                                                                                  gTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGAct                                               >  1:456074/1‑120 (MQ=255)
                                                                                                                                  gTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGAct                                               <  2:456074/120‑1 (MQ=255)
                                                                                                                                   ttttGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCt                >  1:1016421/1‑150 (MQ=255)
                                                                                                                                     ttGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTTTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTgc              <  2:1563723/150‑1 (MQ=255)
                                                                                                                                       ggTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGTTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTgcgc            <  1:17525/150‑1 (MQ=255)
                                                                                                                                         tCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGa          >  2:1492970/1‑150 (MQ=255)
                                                                                                                                           aTGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGAcc        <  2:244086/150‑1 (MQ=255)
                                                                                                                                           aTGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGAcc        >  1:1464921/1‑150 (MQ=255)
                                                                                                                                           aTGGCGACCAGGGCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGAcc        >  1:5702/1‑150 (MQ=255)
                                                                                                                                              gcgcCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGACCGcc     >  1:1597308/1‑150 (MQ=255)
                                                                                                                                              gcgcCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGACCTGATCACCTGCATGGTGTTTAGCTTCACCCGTCGGCCGCTGCGCGACCGcc     >  2:1454888/1‑150 (MQ=255)
                                                                                                                                                 cccTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGACCGCCtgt  <  2:2047357/150‑1 (MQ=255)
                                                                                                                                                 cccTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGACCGCCtgt  >  1:2264668/1‑150 (MQ=255)
                                                                                                                                                    tGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActggc                                            >  1:87741/1‑105 (MQ=255)
                                                                                                                                                    tGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGActggc                                            <  2:87741/105‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
TTCTATCTGATTGCCTACATCAGCAGCGTAGTGCTGATCAACTACGCCTTCTCCAGTGCCCCGCATCTGGACATCATCTGGTCTGCCTGGGGCGGCCTGGTGTTCATCCTGCGCGACATGGTGCAGACCCGTTTTGGTCATGGCGCCCTGGTCGCCATGCTGGTGGCACTGGTGCTGTCCTATGTCACCTCGGAGCCGGCCATCGCCCTGGCCAGCGCCACTGCGTTCTTCATTTCCGAGCTGATCGACTGGCTGGTGTTCAGCATCACCCGTCGGCCGCTGCGCGACCGCCTGT  >  NC_002947/1661374‑1661668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: