Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,811,676 T→A 7.1% T262S (ACG→TCG)  PP_1615 ← LysR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,811,6760TA 7.1% 438.5 / 18.7 140T262S (ACG→TCG) PP_1615LysR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (66/64);  new base A (5/5);  total (71/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01

Only 100 of 142 total aligned reads displayed.

CCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCT  >  NC_002947/1811529‑1811825
                                                                                                                                                    |                                                                                                                                                      
cccGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTAt                                                                                                                                                      >  2:938772/1‑150 (MQ=255)
   gcgAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcg                                                                                                                                                  >  2:446589/1‑150 (MQ=255)
    cgAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcgg                                                                                                                                                 <  1:28177/150‑1 (MQ=255)
      aaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg                                                                                                                                               <  2:322217/150‑1 (MQ=255)
       agagGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcgg                                                                                                                                              <  2:786270/150‑1 (MQ=255)
          ggCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTg                                                                                                                                           <  2:728223/150‑1 (MQ=255)
           gCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCACCAACCGCCGAATACGGCGGtatg                                                                                                                                          >  1:2202298/1‑147 (MQ=255)
             cAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg                                                                                                                                               >  2:557708/1‑143 (MQ=255)
             cAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg                                                                                                                                               <  1:557708/143‑1 (MQ=255)
              aGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTgc                                                                                                                                       <  1:1280126/150‑1 (MQ=255)
                tACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTgcgc                                                                                                                                     <  2:1930061/150‑1 (MQ=255)
                       agcaCATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATACGGCGGtatg                                                                                                                                          <  2:756775/138‑4 (MQ=255)
                       agcaCATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATACGGCGGtatg                                                                                                                                          >  1:756775/1‑135 (MQ=255)
                          acaTCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCagcagc                                                                                                                           <  1:469776/150‑1 (MQ=255)
                          acaTCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCagcagc                                                                                                                           <  1:595090/150‑1 (MQ=255)
                               ccGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGacac                                                                                                                      <  2:2169668/150‑1 (MQ=255)
                               ccGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGacac                                                                                                                      >  1:684557/1‑150 (MQ=255)
                                cGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACACCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCCAGCCACGGTTTTGATGCGGATACAGCGCCCATCCACCCGTATGTACTCGGTTGTGCGCCGCCAGCAGCGACAcc                                                                                                                     >  1:1224521/1‑150 (MQ=255)
                                 gTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATATAGCGCCCATACCGCCGAATACGGCGGtatgg                                                                                                                                         <  1:1768755/129‑5 (MQ=255)
                                 gTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATATAGCGCCCATACCGCCGAATACGGCGGtatgg                                                                                                                                         >  2:1768755/1‑125 (MQ=255)
                                    aGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg                                                                                                                                               >  2:1492514/1‑120 (MQ=255)
                                    aGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTcggcg                                                                                                                                               <  1:1492514/120‑1 (MQ=255)
                                    aGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAgcg                                                                                                                 >  1:279079/1‑150 (MQ=255)
                                      ccGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGca                                                                                                               <  2:2327009/150‑1 (MQ=255)
                                      ccGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGca                                                                                                               <  1:938772/150‑1 (MQ=255)
                                      ccGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATACGGCGGtatgg                                                                                                                                         <  1:2391439/124‑5 (MQ=255)
                                      ccGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATACGGCGGtatgg                                                                                                                                         >  2:2391439/1‑120 (MQ=255)
                                          aaCGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGcaccac                                                                                                           >  2:2030922/1‑150 (MQ=255)
                                           aCGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACt                                                                                                          >  2:1772284/1‑150 (MQ=255)
                                             gATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGt                                                                                                        >  2:2066162/1‑150 (MQ=255)
                                              aTACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGtt                                                                                                       <  1:439832/150‑1 (MQ=255)
                                               tACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTc                                                                                                      <  2:1704649/150‑1 (MQ=255)
                                                aCTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                     <  2:930230/150‑1 (MQ=255)
                                                  tCCGGCATCCCCTCTTGCCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGTGACACCAGCGCACCACTGTTCAgg                                                                                                   <  2:1956035/150‑1 (MQ=255)
                                                  tCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAgg                                                                                                   >  1:1172570/1‑150 (MQ=255)
                                                    cGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGgtg                                                                                                 >  1:1732684/1‑150 (MQ=255)
                                                     ggCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGgtgt                                                                                                <  1:2258748/150‑1 (MQ=255)
                                                        aaCCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                                             <  1:1888510/150‑1 (MQ=255)
                                                          ccccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAg                                                                                           >  2:569777/1‑150 (MQ=255)
                                                          ccccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTCGGTGCGACCCCAGCAGACAAACCATCGCACCACTGTTCAGGTGTTCCAg                                                                                           >  2:2091366/1‑150 (MQ=255)
                                                           cccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTc                                                                                              <  2:1185330/146‑1 (MQ=255)
                                                           cccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTc                                                                                              >  1:1185330/1‑146 (MQ=255)
                                                           cccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGc                                                                                          >  1:1184629/1‑150 (MQ=255)
                                                            ccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGca                                                                                                               >  2:121030/1‑128 (MQ=255)
                                                            ccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCa                                                                                         >  1:1070965/1‑150 (MQ=255)
                                                            ccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGAGGGGTGGTGCGCCTCCAGCTACGACACCAACGCACCACTGTTCAGGTGTTCCAGCa                                                                                         >  1:1206888/1‑150 (MQ=255)
                                                             cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCAc                                                                                        >  1:1957708/1‑150 (MQ=255)
                                                             cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCAc                                                                                        >  1:1855345/1‑150 (MQ=255)
                                                              gCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACg                                                                                       <  1:791392/150‑1 (MQ=255)
                                                                cAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgta                                                                                     >  1:2080631/1‑150 (MQ=255)
                                                                cAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgta                                                                                     <  2:1008463/150‑1 (MQ=255)
                                                                 aaCCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgtag                                                                                    <  2:651353/150‑1 (MQ=255)
                                                                      ctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                    >  1:716857/1‑129 (MQ=255)
                                                                             aGGTGATTCACCAGGCGCCGTACCTGCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAAc                                                                        >  2:1852130/1‑150 (MQ=255)
                                                                             aGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAAc                                                                        >  1:1734138/1‑150 (MQ=255)
                                                                               gTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTg                                                                      >  1:934827/1‑150 (MQ=255)
                                                                                tAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTgg                                                                     <  1:1259928/150‑1 (MQ=255)
                                                                                  aTCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                    <  2:1078583/117‑1 (MQ=255)
                                                                                  aTCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                    >  1:1078583/1‑117 (MQ=255)
                                                                                   tCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGcac                                                                  >  2:4933/1‑150 (MQ=255)
                                                                                   tCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGcac                                                                  >  1:430287/1‑150 (MQ=255)
                                                                                     caccaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACaa                                                                <  2:535133/150‑1 (MQ=255)
                                                                                     caccaGCCGCCGTACCTTCGGCGACAGGAGACTCTGCTGCGGATACAGCGCCCATACCGACGTATTCGGCGGTTGGTGCGCCTCCAGCAGGGACACCAGCGCAGTACTGTTCAGGTGTTTGAGCACGTCGTATTTGGTGACCTGGCACaa                                                                >  1:1695789/1‑150 (MQ=255)
                                                                                     caccaGCCGCCGTAACTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACaa                                                                >  2:1799360/1‑150 (MQ=255)
                                                                                      accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                    >  2:2006228/1‑113 (MQ=255)
                                                                                      accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                    <  1:2006228/113‑1 (MQ=255)
                                                                                      accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAc                                                               >  1:1534100/1‑150 (MQ=255)
                                                                                      accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAc                                                               <  2:2080631/150‑1 (MQ=255)
                                                                                        caGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAccc                                                             >  1:909504/1‑150 (MQ=255)
                                                                                          gccgccGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGa                                                           >  1:1539214/1‑150 (MQ=255)
                                                                                             gccgTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTc                                                        >  1:254657/1‑150 (MQ=255)
                                                                                                    cTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATc                                                                               >  1:178678/1‑120 (MQ=255)
                                                                                                     ttCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACATCAGCGCACCACTGTTCAGGTGtt                                                                                               <  2:1184777/103‑1 (MQ=255)
                                                                                                       cGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAgcgc                                              <  2:1539214/150‑1 (MQ=255)
                                                                                                         gCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                                             >  2:834892/1‑101 (MQ=255)
                                                                                                         gCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                                             <  1:834892/101‑1 (MQ=255)
                                                                                                               ggTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCa                                      <  2:684557/150‑1 (MQ=255)
                                                                                                                gTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCCCACCACTGTTCAg                                                                                                    <  2:938309/87‑1 (MQ=255)
                                                                                                                 tGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGc                                    >  2:1441001/1‑150 (MQ=255)
                                                                                                                      ctgctgCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGc                               <  1:2091366/150‑1 (MQ=255)
                                                                                                                       tgctgcGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAcc                                                              >  1:621079/1‑118 (MQ=255)
                                                                                                                       tgctgcGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGcc                              <  2:1172570/150‑1 (MQ=255)
                                                                                                                         ctgcGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCtt                            <  1:1852130/150‑2 (MQ=255)
                                                                                                                          tgcGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTg                                                                      <  2:127625/107‑1 (MQ=255)
                                                                                                                              gATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCAc                       >  1:989764/1‑150 (MQ=255)
                                                                                                                               aTACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCaa                                                                         >  2:1789597/1‑99 (MQ=255)
                                                                                                                               aTACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCaa                                                                         <  1:1789597/99‑1 (MQ=255)
                                                                                                                                  cAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGtt                   <  2:279079/150‑1 (MQ=255)
                                                                                                                                   aGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTg                  >  1:1707313/1‑150 (MQ=255)
                                                                                                                                   aGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTg                  >  2:904619/1‑150 (MQ=255)
                                                                                                                                     cgcCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCa                >  1:2282993/1‑150 (MQ=255)
                                                                                                                                      gcCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCCCGTGGTAATCAGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAg               >  1:541868/1‑150 (MQ=255)
                                                                                                                                      gcCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAg               <  2:168338/150‑1 (MQ=255)
                                                                                                                                      gcCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAAAGACACCGGCGCACCACAGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAg               >  2:868100/1‑150 (MQ=255)
                                                                                                                                       cccATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAgc              <  1:1441001/150‑1 (MQ=255)
                                                                                                                                         ccATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAgcg             >  1:1019800/1‑150 (MQ=255)
                                                                                                                                            tACCGCCGTATTCGGCGGTTGGTGCGACTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCa          <  2:2135692/150‑1 (MQ=255)
                                                                                                                                               cgccgTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGtt       >  2:288084/1‑150 (MQ=255)
                                                                                                                                                    tATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCATCTCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCt  <  1:1195736/150‑1 (MQ=255)
                                                                                                                                                    tATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCt  >  2:1548495/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                      
CCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCT  >  NC_002947/1811529‑1811825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: