Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,004,616 T→C 8.1% intergenic (+63/+87) PP_1787 → / ← PP_1788 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,004,6160TC 8.1% 288.0 / 10.6 99intergenic (+63/+87)PP_1787/PP_1788hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (47/44);  new base C (4/4);  total (51/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01

Only 100 of 102 total aligned reads displayed.

GCGCCCGTATTTTCAAGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGA  >  NC_002947/2004467‑2004764
                                                                                                                                                     |                                                                                                                                                    
gcgcCCGTATTTTCAAGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGAtt                                                                                                                                                      >  2:1143779/1‑150 (MQ=255)
         ttttCAAGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAg                                                                                                                                             <  1:1248763/150‑1 (MQ=255)
            tCAAGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAAATCTGCAATAAGCTa                                                                                                                                          <  2:1739776/150‑1 (MQ=255)
              aaGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTAtt                                                                                                                                        >  2:204533/1‑150 (MQ=255)
               aGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTAttt                                                                                                                                       <  2:1392447/150‑1 (MQ=255)
                  tttCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTa                                                                                                                                    >  1:1389196/1‑150 (MQ=255)
                   ttCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTaa                                                                                                                                   >  1:1161730/1‑150 (MQ=255)
                                gTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGa                                                                                                                      <  2:473876/150‑1 (MQ=255)
                                   gAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAACTTTGTTAGCTGAGGc                                                                                                                   >  2:435979/1‑150 (MQ=255)
                                   gAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGc                                                                                                                   >  2:980718/1‑150 (MQ=255)
                                   gAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGc                                                                                                                   >  1:1511730/1‑150 (MQ=255)
                                     aaTTTAAAAGTGAGTTTTTTTTTTTTTTTTAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGa                                                                                                                 >  2:140712/1‑150 (MQ=255)
                                       tttAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGATGAGGCGATc                                                                                                               <  1:1579179/150‑1 (MQ=255)
                                            aaGTGAGTTTTTTTACGTGACTGAATTTACGCTTAATGCTTAATAATATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTTCAATAAGCTATTTCTAAATTTTTTAGCTGAGGCGATCTGttt                                                                                                          >  2:97162/1‑150 (MQ=255)
                                               tGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATTAAATAGCTTATTGCAGATTTGCAATAAGCTa                                                                                                                                          >  2:411951/1‑115 (MQ=255)
                                               tGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATTAAATAGCTTATTGCAGATTTGCAATAAGCTa                                                                                                                                          <  1:411951/115‑1 (MQ=255)
                                                  gTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCCGATTCGCAAGAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGa                                                                                                    <  1:435979/150‑1 (MQ=255)
                                                         gACGTGACTGAAATGACGCTTAATGCTTAATAATTTATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGaaa                                                                                             <  1:2075711/150‑1 (MQ=255)
                                                               aCTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTc                                                                                       >  2:1784317/1‑150 (MQ=255)
                                                                cTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCg                                                                                      <  1:1450890/150‑1 (MQ=255)
                                                                   aaaTGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCt                                                                                   <  1:1143779/150‑1 (MQ=255)
                                                                       gACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAgg                                                                               <  2:2306582/150‑1 (MQ=255)
                                                                        aCGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATaa                                                                                                                                              <  2:146397/86‑1 (MQ=255)
                                                                        aCGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATaa                                                                                                                                              >  1:146397/1‑86 (MQ=255)
                                                                        aCGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGc                                                                              >  1:443826/1‑150 (MQ=255)
                                                                          gcttaatgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTAt                                                                                                                                         <  1:2432422/89‑1 (MQ=255)
                                                                          gcttaatgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTAt                                                                                                                                         >  2:2432422/1‑89 (MQ=255)
                                                                           cttaatgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCGGAGGCGTTCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCttt                                                                           >  1:1344661/1‑150 (MQ=255)
                                                                            ttaatgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTtg                                                                          <  1:1417185/150‑1 (MQ=255)
                                                                            ttaatgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTtg                                                                          >  1:2242608/1‑150 (MQ=255)
                                                                               atgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGa                                                                       <  2:1161730/150‑1 (MQ=255)
                                                                                tgcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGTATGTGAAACCTCTCGCCTCAGCCTTTGTCAt                                                                      >  2:401850/1‑150 (MQ=255)
                                                                                 gcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGa                                                                                                    <  2:361425/119‑1 (MQ=255)
                                                                                 gcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGa                                                                                                    >  1:361425/1‑119 (MQ=255)
                                                                                 gcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGAtg                                                                     <  2:1389196/150‑1 (MQ=255)
                                                                                 gcttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGAtg                                                                     >  1:428039/1‑150 (MQ=255)
                                                                                   ttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGAt                                                                      >  2:2028465/1‑147 (MQ=255)
                                                                                   ttaatAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGAt                                                                      <  1:2028465/147‑1 (MQ=255)
                                                                                     aataaGATATTTATAGTCTACCCCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTaaa                                                                                                                                  <  2:1009439/85‑1 (MQ=255)
                                                                                     aataaGATATTTATAGTCTACCCCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTaaa                                                                                                                                  >  1:1009439/1‑85 (MQ=255)
                                                                                      ataaGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTAt                                                                <  1:1784317/150‑1 (MQ=255)
                                                                                       taaGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAGATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGa                                                                       >  2:2157373/1‑142 (MQ=255)
                                                                                       taaGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAGATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGa                                                                       <  1:2157373/142‑1 (MQ=255)
                                                                                       taaGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTAtt                                                               >  2:1472654/1‑150 (MQ=255)
                                                                                         aGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTa                                                             <  1:140712/150‑1 (MQ=255)
                                                                                           atatTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATg                                                           >  1:637309/1‑150 (MQ=255)
                                                                                              tttATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATa                                                        >  2:613414/1‑150 (MQ=255)
                                                                                                tataGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTa                                                                                                                           <  2:1427700/81‑1 (MQ=255)
                                                                                                tataGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTa                                                                                                                           >  1:1427700/1‑81 (MQ=255)
                                                                                                  taGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAgtgt                                                    >  2:654795/1‑150 (MQ=255)
                                                                                                   aGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGtt                                                   <  1:2449242/150‑1 (MQ=255)
                                                                                                     tCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTTGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTCTTTATTATAGTTTTGa                                                 >  2:301391/1‑150 (MQ=255)
                                                                                                     tCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGa                                                 <  1:1463725/150‑1 (MQ=255)
                                                                                                     tCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGa                                                 >  2:2401090/1‑150 (MQ=255)
                                                                                                     tCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGNTGa                                                 <  2:1511730/150‑1 (MQ=255)
                                                                                                       tACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGtttttt                                                                                                       <  2:1965537/94‑1 (MQ=255)
                                                                                                       tACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGtttttt                                                                                                       >  1:1965537/1‑94 (MQ=255)
                                                                                                          cTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTaa                                            >  1:751700/1‑150 (MQ=255)
                                                                                                           tCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTTTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAg                                           >  2:1237486/1‑150 (MQ=255)
                                                                                                             accTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCATTGTGATGTGTATTTATGATAGTGTTGATCTAAGCt                                         >  2:187483/2‑150 (MQ=255)
                                                                                                              ccTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCtt                                        >  1:223278/1‑150 (MQ=255)
                                                                                                              ccTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCtt                                        >  2:277826/1‑150 (MQ=255)
                                                                                                               cTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTg                                       >  1:1500288/1‑150 (MQ=255)
                                                                                                                    cATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCNATa                                  <  2:1500288/150‑1 (MQ=255)
                                                                                                                     aTGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCGATAc                                 >  2:2244815/1‑150 (MQ=255)
                                                                                                                      tGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACg                                <  2:223278/150‑1 (MQ=255)
                                                                                                                       gCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACgg                               <  1:1472654/150‑1 (MQ=255)
                                                                                                                        ccccGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGGAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGa                              >  1:321809/1‑150 (MQ=255)
                                                                                                                           cGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTg                           >  1:223333/1‑150 (MQ=255)
                                                                                                                           cGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTACTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAg                                           >  2:791514/1‑134 (MQ=255)
                                                                                                                           cGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTACTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAg                                           <  1:791514/134‑1 (MQ=255)
                                                                                                                               aaTGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGttt                       <  1:204533/150‑1 (MQ=255)
                                                                                                                                  gAAATAGCTTATTGCAGATTTGCAATAAGCTATTGCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTaa                    <  1:613414/150‑1 (MQ=255)
                                                                                                                                   aaaTAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAAt                   <  2:587182/150‑1 (MQ=255)
                                                                                                                                     aTAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATgg                 <  1:301391/150‑1 (MQ=255)
                                                                                                                                     aTAGCTTATTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGAtt                            >  1:1978459/1‑139 (MQ=255)
                                                                                                                                     aTAGCTTATTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGAtt                            <  2:1978459/139‑1 (MQ=255)
                                                                                                                                      tAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGt                <  1:1022013/150‑1 (MQ=255)
                                                                                                                                      tAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGt                <  2:223333/150‑1 (MQ=255)
                                                                                                                                      tAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGt                >  1:1339765/1‑150 (MQ=255)
                                                                                                                                       aGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTg               <  1:980718/150‑1 (MQ=255)
                                                                                                                                       aGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTg               <  1:2401090/150‑1 (MQ=255)
                                                                                                                                        gCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGc                                      <  1:707435/126‑1 (MQ=255)
                                                                                                                                        gCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGc                                      <  1:706543/126‑1 (MQ=255)
                                                                                                                                        gCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGc                                      >  2:706543/1‑126 (MQ=255)
                                                                                                                                        gCTTATTGCAGATTTGCAATAAGCAATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGc                                      >  2:707435/1‑126 (MQ=255)
                                                                                                                                        gCTTATTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGc              >  1:1153177/1‑150 (MQ=255)
                                                                                                                                         cTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGcc             >  2:609079/1‑150 (MQ=255)
                                                                                                                                         cTTATTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTaa                                            <  2:179195/119‑1 (MQ=255)
                                                                                                                                         cTTATTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTaa                                            >  1:179195/1‑119 (MQ=255)
                                                                                                                                          ttATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTgg                                                                                                     >  2:2142691/1‑61 (MQ=255)
                                                                                                                                          ttATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTgg                                                                                                     <  1:2142691/61‑1 (MQ=255)
                                                                                                                                            aTTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTg                                                                                                      <  1:2439477/58‑1 (MQ=25)
                                                                                                                                            aTTGCAAATCTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTg                                                                                                      >  2:2439477/1‑58 (MQ=25)
                                                                                                                                                cAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTTTTTTTTTTTCCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGAAATCtttt      >  2:503396/1‑150 (MQ=255)
                                                                                                                                                 aGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCtt                                        <  1:1626099/115‑1 (MQ=255)
                                                                                                                                                 aGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCtt                                        >  2:1626099/1‑115 (MQ=255)
                                                                                                                                                   aTTTGCAATAAGCTACTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTTCTGGGGATTTATGTTCGGGTTGCTCTAAGCTTGCAATACGGCCTGGGTTTAGTGCTTCCATCtgtgttt   >  1:149578/1‑144 (MQ=255)
                                                                                                                                                    tttGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGa  <  1:97162/150‑1 (MQ=255)
                                                                                                                                                    tttGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGa  <  2:751700/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCGCCCGTATTTTCAAGGTTTCAAAGTTCGCGGTCGAAATTTAAAAGTGAGTTTTTTGACGTGACTGAAATGACGCTTAATGCTTAATAAGATATTTATAGTCTACCTCCCCTTGACATGCCCCGAAAATGAAATAGCTTATTGCAGATTTGCAATAAGCTATTTCTAAATTTGTTAGCTGAGGCGATCGGTTTTTTGGATGTGAAACCGCTCGCCTCAGGCTTTGTGATGTGTATTTATGATAGTGTTGATCTAAGCTTGCAATACGGATTGGTTTTAATGGTGCCATCTTTTTTGA  >  NC_002947/2004467‑2004764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: