Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,049,346 | G→T | 5.8% | intergenic (‑32/+28) | PP_1822 ← / ← folEA‑I | hypothetical protein/GTP cyclohydrolase I |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,049,346 | 0 | G | T | 5.8% | 301.8 / 4.6 | 96 | intergenic (‑32/+28) | PP_1822/folEA‑I | hypothetical protein/GTP cyclohydrolase I |
Reads supporting (aligned to +/- strand): ref base G (42/47); new base T (4/2); total (46/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
GCTTGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGCACATG > NC_002947/2049199‑2049494 | gCTTGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGaa < 1:633232/150‑1 (MQ=255) cTTGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGCAGTTGAGCTGGCCGAGGCTTGCCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAg < 1:886423/150‑1 (MQ=255) ttGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAATTTCTGAAATGCAAAAGCCGACCCTGAAgg < 1:665863/150‑1 (MQ=255) ttGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg < 1:589269/150‑1 (MQ=255) ttGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg < 1:915899/150‑1 (MQ=255) cTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTc < 2:1081208/150‑1 (MQ=255) gATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGc > 1:105697/1‑150 (MQ=255) cGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCgg < 1:2058401/150‑1 (MQ=255) cTGGGCGGCGGCGTCGCGTTTGCGCTTGGCAGGGCGGCTGTTCCACTCACCGAAGACGATGAGCTGGCCGAGGGCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCa < 1:1115094/150‑1 (MQ=255) tGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGaa > 1:1959728/1‑132 (MQ=255) tGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGaa < 2:1959728/132‑1 (MQ=255) tGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg < 2:1267021/134‑1 (MQ=255) tGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg > 1:1267021/1‑134 (MQ=255) tGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAg < 2:800424/150‑1 (MQ=255) ggcggcgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCgg > 1:1513288/1‑139 (MQ=255) ggcggcgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCgg < 2:1513288/139‑1 (MQ=255) cggcgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCa‑a < 1:1710547/150‑1 (MQ=255) gcgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCa‑a > 1:204580/1‑148 (MQ=255) gcgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCa‑a < 2:204580/148‑1 (MQ=255) cgTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCACCCCGCAGGGCTGTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCa < 2:1381415/150‑1 (MQ=255) gTCGCGTTTGCGCTTGGCCGGGCGGCTTATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCAc > 1:2277526/1‑150 (MQ=255) tCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACt < 2:644454/150‑1 (MQ=255) gTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCCGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTCAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGAt < 1:1044288/150‑1 (MQ=255) cTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGATCGGCCCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTg > 2:1145307/1‑150 (MQ=255) ttGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg < 2:41182/110‑1 (MQ=255) ttGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAgg > 1:41182/1‑110 (MQ=255) ttGGCCGGGCGGCTGATCCAGGCACCTAAGGGTATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGTTCATGGGCAACTCCTGAAAGGCAAAAGCCGACCCTTAAGGGTCTGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGa < 2:989046/150‑1 (MQ=255) gCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGTCCAGCAACCA‑ATCACtt > 2:472172/1‑136 (MQ=255) gCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGTCCAGCAACCA‑ATCACtt < 1:472172/136‑1 (MQ=255) cggcTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGc < 2:316034/150‑1 (MQ=255) cTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGc < 2:105697/150‑1 (MQ=255) cTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGc < 1:1059366/150‑1 (MQ=255) aTCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCAc > 2:915718/1‑122 (MQ=255) aTCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCAc < 1:915718/122‑1 (MQ=255) aTCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCggg > 1:1470727/1‑150 (MQ=255) cAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTgg > 1:1030282/1‑150 (MQ=255) cGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGtt > 2:147671/1‑150 (MQ=255) gATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTcgc > 2:452312/1‑148 (MQ=255) gATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTcgc < 1:452312/148‑1 (MQ=255) gCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTc > 1:2155711/1‑150 (MQ=255) gCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGCCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTc < 1:221515/150‑1 (MQ=255) ccGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCa > 1:969332/1‑150 (MQ=255) aGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCa < 1:667721/150‑1 (MQ=255) gCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTcgc < 1:2412231/133‑1 (MQ=255) gCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGACAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTcgc > 2:2412231/1‑133 (MQ=255) cAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCAc > 2:902694/1‑150 (MQ=255) aaCCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCAcc > 2:65673/1‑150 (MQ=255) cAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCAcc < 1:2065741/134‑1 (MQ=255) cAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCAcc > 2:2065741/1‑134 (MQ=255) ggCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATc > 2:680399/1‑150 (MQ=255) tttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAATCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGa < 2:1233892/140‑1 (MQ=255) tttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAATCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGa > 1:1233892/1‑140 (MQ=255) tttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCg > 1:1077594/1‑96 (MQ=255) tttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCg < 2:1077594/96‑1 (MQ=255) ttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCTCGGTGAtgctgg < 2:2277526/150‑6 (MQ=255) ttGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGACGAGCCTCGGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCACCACCGAGGTGATCATgg > 1:413827/1‑150 (MQ=255) gACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTc < 1:65673/150‑1 (MQ=255) gATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCgg > 1:2384220/1‑96 (MQ=255) gATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCgg < 2:2384220/96‑1 (MQ=255) gATCATGCGCAACTCCTTAAATGTAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCAGATAACAT‑ATCAGGCTGAGGAACTCGCTGCGGGTGTCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGaa < 1:147671/150‑1 (MQ=255) tCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGc > 1:543176/1‑53 (MQ=255) tCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGc < 2:543176/53‑1 (MQ=255) tGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTg < 2:1002463/150‑1 (MQ=255) gCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCtt > 2:280464/1‑150 (MQ=255) aCTCCTGAAATGCAAAGGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtctc < 2:1221945/150‑1 (MQ=255) aCTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtctc < 1:649598/150‑1 (MQ=255) aCTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACGCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtctc < 2:940786/150‑1 (MQ=255) tCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtctc > 2:2099705/1‑148 (MQ=255) tCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtctc < 1:2099705/148‑1 (MQ=255) tCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGa > 1:1560231/1‑150 (MQ=255) tCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGa > 1:1582196/1‑150 (MQ=255) ccTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGACCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGt > 2:2293854/1‑132 (MQ=255) ccTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGACCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGt < 1:2293854/132‑1 (MQ=255) tGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGacac > 1:1209938/1‑150 (MQ=255) tGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGacac > 1:164538/1‑150 (MQ=255) aaTGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACcgc > 1:981883/1‑150 (MQ=255) tGCAAAAGAAGGCCCTGGAAGGTCGGAACTACGCCGACAACCA‑AGCACTTGATCAGGCTGACGCACAGGCCACCGTGGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCgcgc < 1:2253611/150‑1 (MQ=255) cccgaGCCGACCCTTCAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtct < 2:893538/133‑1 (MQ=255) cccgaGCCGACCCTTCAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTtct > 1:893538/5‑137 (MQ=255) ccgaGCCGACCCTTCAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGcatc > 1:1753317/4‑150 (MQ=255) cgaGCCGACCCTTCAGGGTCGGCTTGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGcatca > 2:2396963/3‑150 (MQ=255) ccGACCCTTCAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGcatcatcat > 1:2191824/1‑150 (MQ=255) ccGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCTCTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGcatcatcat < 2:1102621/150‑1 (MQ=255) ccGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCAcc > 1:1166700/1‑103 (MQ=255) ccGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCAcc < 2:1166700/103‑1 (MQ=255) ccGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGcatcatcat > 1:1160315/1‑150 (MQ=255) aCCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGca < 2:1470727/150‑1 (MQ=255) ccTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAAc < 2:99459/83‑1 (MQ=255) ccTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAAc > 1:99459/1‑83 (MQ=255) ccTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGac > 1:2374430/1‑130 (MQ=255) ccTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGac < 2:2374430/130‑1 (MQ=255) ccTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGcaca > 1:2097137/1‑150 (MQ=255) cTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGCACAt > 2:352229/1‑150 (MQ=255) tGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAg < 1:27947/47‑1 (MQ=255) tGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAg > 2:27947/1‑47 (MQ=255) tGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGCACAtg > 1:1132815/1‑150 (MQ=255) | GCTTGCTCGATGCGGGCCTGGGCGGCGGCGTCGCGTTTGCGCTTGGCCGGGCGGCTGATCCAGTCACCGAAGACGATGAGCTGGCCGAGGCCAACCCGCAGGGCTTTGACGATCATGGGCAACTCCTGAAATGCAAAAGCCGACCCTGAAGGGTCGGCTCGGGGCCAGCAACCA‑ATCACTTGATCAGGCTGAGGAACTCGCTGCGGGTGGCGGCGTTGTCGCGGAACTCACCCAGCATCACCGAGGTGATCATGGTCGAATTCTGCTTCTCGACACCGCGCATCATCATGCACATG > NC_002947/2049199‑2049494 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |