| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,173,821 | A→C | 9.0% | A83A (GCT→GCG) ‡ | PP_1926 ← | phosphotyrosine‑protein phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,173,821 | 0 | A | C | 9.0% | 236.7 / 14.7 | 94 | A83A (GCT→GCG) ‡ | PP_1926 | phosphotyrosine‑protein phosphatase |
| Reads supporting (aligned to +/- strand): ref base A (33/52); new base C (5/4); total (38/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 | |||||||||||
TTCCGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGC > NC_002947/2173673‑2173962 | ttCCGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAg > 1:712306/1‑150 (MQ=255) ccGGATTCGATCAGCAGACGGGCAGCGAACATCCCGGTGCGGAAACATGGCAAGC‑AGGTGTTGATTGCCAGGGCCTTGTTGGAAGCGAGCATAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGcc < 2:1242193/150‑1 (MQ=255) ccGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGcc < 2:712306/150‑1 (MQ=255) ccGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGcc < 2:1682578/150‑1 (MQ=255) cGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCt < 1:1168904/150‑1 (MQ=255) ggATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCTAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGCTCCTg > 2:606448/1‑150 (MQ=255) gATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGa < 2:1301824/150‑1 (MQ=255) aTTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGat < 2:276320/150‑1 (MQ=255) ttCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGatc > 2:840619/1‑150 (MQ=255) ttCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGatc < 2:1140126/150‑1 (MQ=255) tCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCt < 1:869782/150‑1 (MQ=255) gcagACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGa < 1:1812475/150‑1 (MQ=255) agACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATc < 2:978408/150‑1 (MQ=255) agACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATc < 1:2232957/150‑1 (MQ=255) gACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCCAATCTCTTCCAGCCGAGCCTTGAAGTTTTGATCACGAGCCCGATCATCCTCGATCg > 2:145978/1‑150 (MQ=255) gggCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCNGCa < 2:1496562/150‑1 (MQ=255) cAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCt < 1:641147/150‑1 (MQ=255) gAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa < 2:1469592/150‑1 (MQ=255) gAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa < 1:476745/150‑1 (MQ=255) gAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa < 1:295680/150‑1 (MQ=255) gAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa < 1:107290/150‑1 (MQ=255) aGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCAc < 2:140137/150‑1 (MQ=255) gCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACt < 2:1594811/150‑1 (MQ=255) cccGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATcc > 1:2009729/1‑127 (MQ=255) cccGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATcc < 2:2009729/127‑1 (MQ=255) cGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAANCCa < 2:1516762/150‑1 (MQ=255) gccCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGGGTAACTGCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGc > 2:1902350/1‑150 (MQ=255) gccCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGc < 2:1739611/150‑1 (MQ=255) cccTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCAt > 2:325602/1‑139 (MQ=255) cccTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCAt < 1:325602/139‑1 (MQ=255) aGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGa > 1:2196737/1‑147 (MQ=255) aGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGa < 2:2196737/147‑1 (MQ=255) gTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATAcc > 1:486246/1‑150 (MQ=255) gATTGCCAGTGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAg > 2:1354919/1‑150 (MQ=255) aTTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGc < 1:840619/150‑1 (MQ=255) aTTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAACTGGAACCACTCCAACCTATGCTGCTTGGCCGCGATGCCAAGc > 1:1112794/1‑150 (MQ=255) aTTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGACGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGc > 1:2049581/1‑150 (MQ=255) tGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTg < 2:1667460/150‑1 (MQ=255) gCCAGTGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTgg < 1:1354919/150‑1 (MQ=255) gCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTgg < 1:2425172/150‑1 (MQ=255) cAGGGCCTTGTTGGAAGCGAGCAACGCGTCCAACTGGTGGCGAATCTCGCCCAGCCGAGCCTAGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCAGTCGAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGc > 2:861331/1‑150 (MQ=255) ggCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCtt < 1:1831124/126‑1 (MQ=255) ggCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCtt > 2:1831124/1‑126 (MQ=255) gttgGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGtt < 1:2353505/150‑1 (MQ=255) ttgGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGttt > 1:56224/1‑150 (MQ=255) tgGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGtttt < 2:1614991/150‑1 (MQ=255) tgGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGtttt < 1:2312870/150‑1 (MQ=255) ggAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTc < 1:1940095/150‑1 (MQ=255) gCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGa > 1:2209624/1‑150 (MQ=255) gCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGa > 2:2281011/1‑150 (MQ=255) aaaGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGctct < 1:1120363/150‑1 (MQ=255) aaGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTg < 2:667416/150‑1 (MQ=255) gCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGAt < 2:510552/71‑1 (MQ=255) gCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGAt > 1:510552/1‑71 (MQ=255) tCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTcc < 1:639920/150‑1 (MQ=255) aaCTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGcc > 2:37162/1‑51 (MQ=255) aaCTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGcc < 1:37162/51‑1 (MQ=255) tggtggCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATc > 2:148263/1‑150 (MQ=255) ggtgaCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCa < 2:2049581/150‑1 (MQ=255) gAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa < 1:248128/67‑1 (MQ=255) gAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGaa > 2:248128/1‑67 (MQ=255) gAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTaa > 2:1953192/1‑150 (MQ=255) tctctcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACaa > 1:983634/1‑150 (MQ=255) tcCCAGCCGAGCCTCGGAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCAtgc < 2:1776478/76‑1 (MQ=255) tcCCAGCCGAGCCTCGGAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCAtgc > 1:1776478/1‑76 (MQ=255) tcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGctc < 2:486758/123‑1 (MQ=255) tcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGctc > 1:486758/1‑123 (MQ=255) tcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAgcgc > 1:195311/1‑150 (MQ=255) tcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAgcgc < 1:1953192/150‑1 (MQ=255) cccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGGTGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCt > 1:78678/1‑150 (MQ=255) cccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCt > 1:724577/1‑150 (MQ=255) ccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTa > 2:57215/1‑150 (MQ=255) ccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTa > 1:2390341/1‑150 (MQ=255) cAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc < 2:983634/150‑1 (MQ=255) cAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc < 1:2281011/150‑1 (MQ=255) cAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc < 1:148263/150‑1 (MQ=255) gAGCCTCGAAGTTTTGATCAGGAGCATAATCATCATAAACCAGCAGCTGGAACAACTCCAATACATGCTGGTTGACCGCAATGCCAAGCTGGGCAACTCCGATTTTCTAAAGCTCTGCGTCCGAAATAAGCGTAACAAGCGCTACGGCAc > 2:83846/1‑150 (MQ=255) cTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCGTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGc < 2:1442446/150‑1 (MQ=255) tCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTTCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGcc > 1:1982203/1‑150 (MQ=255) ttttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTg > 1:1365827/1‑150 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCg > 1:2213696/4‑141 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCg > 1:2213279/4‑141 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCg < 2:2213696/138‑1 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCg < 2:2213279/138‑1 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCt > 2:267141/4‑145 (MQ=255) ggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCt < 1:267141/142‑1 (MQ=255) tttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGACTCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGa < 1:1972766/150‑1 (MQ=255) gatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAg > 2:615400/3‑127 (MQ=255) gatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAg < 1:615400/125‑1 (MQ=255) ttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAg < 2:1168283/150‑1 (MQ=255) tGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc < 2:394308/150‑1 (MQ=255) tGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc < 1:102669/150‑1 (MQ=255) ggAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTg > 1:2025448/1‑137 (MQ=255) ggAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTg < 2:2025448/137‑1 (MQ=255) | TTCCGGATTCGATCAGCAGACGGGCAGCGAACAGCCCGGTGCGGCCGGA‑GCCGCCCTTGCAGTGGATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGC > NC_002947/2173673‑2173962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |