BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,890,488	C→G	6.7%	G55G (GGG→GGC)	PP_2544 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,890,488	0	C	G	6.7%	322.9 / 12.7	105	G55G (GGG→GGC)	PP_2544	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (50/47); new base G (3/4); total (53/52)
Fisher's exact test for biased strand distribution p-value = 7.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01

Only 100 of 109 total aligned reads displayed.

CTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGCAAG  >  NC_002947/2890340‑2890636

cTTCATGCCTGACTACCAGATCCTGGACATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGAAACCGGCCGGCTCCCTTGGGG‑‑Acc                                                                                                                                                        >  2:1209960/1‑150 (MQ=255)

 ttCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑Accc                                                                                                                                                       <  2:1558184/150‑1 (MQ=255)

     tGCCAGACTACCAGATCCTGGTCATTTCCAACGGTATCGCAGCGGCGGTCGGGATGGCGGTGGGTGACGTGGACCCGATCCGCTCTGGTAGCAAGCAGCACTAAGCATCACTAGCCTCTGGAAACGGCCGGCTCACTTGGGG‑‑ACCCCGcc                                                                                                                                                   >  2:1121266/1‑150 (MQ=255)

          gACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTc                                                                                                                                              >  2:305028/1‑150 (MQ=255)

            cTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTGGTGGTGGCGATGGGTGTGGTGCATCAAAGGCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTcgc                                                                                                                                            <  1:1614156/150‑1 (MQ=255)

            cTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTcgc                                                                                                                                            <  2:2350613/150‑1 (MQ=255)

              aCCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGGCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTGACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGTTTccaga                                                                                                                                          <  2:2166902/150‑5 (MQ=38)

               ccAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCgtt                                                                                                                                         >  1:341646/1‑150 (MQ=255)

               ccAGATCCTGGTCATTTCCACCGGTATCACTGCGGCGGTCGTGGTGGCGATGGGTGGGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCGCTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCgtt                                                                                                                                         >  2:1255026/1‑150 (MQ=255)

                  gATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTATGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCgttgtt                                                                                                                                      >  1:2188895/1‑150 (MQ=255)

                      cTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTTGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTTCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGc                                                                                                                                  <  1:1196284/150‑1 (MQ=255)

                      cTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGc                                                                                                                                  >  1:312927/1‑150 (MQ=255)

                       tGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGt                                                                                                                                                 <  1:374112/134‑1 (MQ=39)

                       tGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGt                                                                                                                                                 >  2:374112/1‑134 (MQ=39)

                       tGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGc‑c                                                                                                                                >  1:2192782/1‑150 (MQ=255)

                        ggTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑Ct                                                                                                                               <  2:165956/150‑1 (MQ=255)

                         gTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTg                                                                                                                              >  2:1681300/1‑150 (MQ=255)

                            aTTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGc                                                                                                                           >  1:1567108/1‑150 (MQ=255)

                               tCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCCCGTTGTTGGGC‑CTGGGCtt‑t                                                                                                                       <  1:1209960/150‑1 (MQ=255)

                                 cACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTCGCACGCCGCACTAAGCGTCACTCGCCTCTGCAAACGGCCGGCTCCGTTGGGG‑‑ACCCGGCCGTTTAGCGTGGTTAGGG‑CGGGTCgt‑ttt                                                                                                                     >  2:1129320/1‑150 (MQ=255)

                                 cACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCtt‑ttt                                                                                                                     >  1:1250813/1‑150 (MQ=255)

                                 cACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGAG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCtt‑ttt                                                                                                                     >  2:761134/1‑150 (MQ=255)

                                  aCCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑Acc                                                                                                                                                        >  1:1979456/1‑116 (MQ=255)

                                  aCCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑Acc                                                                                                                                                        <  2:1979456/116‑1 (MQ=255)

                                     ggTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGc                                                                                                                 <  1:237793/150‑1 (MQ=255)

                                       tATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGtt                                                                                                                                                <  1:1410631/119‑1 (MQ=38)

                                       tATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGtt                                                                                                                                                <  1:1412770/119‑1 (MQ=38)

                                       tATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGtt                                                                                                                                                >  2:1410631/1‑119 (MQ=38)

                                       tATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGG‑‑AGCCGGCCGtt                                                                                                                                                >  2:1412770/1‑119 (MQ=38)

                                           gCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCAt                                                                                                           >  1:1791630/1‑150 (MQ=255)

                                             tGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCAtgt                                                                                                         <  1:1811350/150‑1 (MQ=255)

                                             tGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCAtgt                                                                                                         <  1:300782/150‑1 (MQ=255)

                                                ggcggTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTcca                                                                                                                                            >  1:2445157/1‑112 (MQ=255)

                                                ggcggTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CCGGGCTT‑TTTCTGCGGGCATGTGGa                                                                                                      <  2:1627447/150‑1 (MQ=255)

                                                   ggTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAAc                                                                                                   >  1:1034618/1‑150 (MQ=255)

                                                     tCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGc                                                                                                 <  2:2178240/150‑1 (MQ=255)

                                                        tggtggCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGTATCGGCCGGCCCCCGTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTgg                                                                                              <  2:314232/150‑1 (MQ=255)

                                                        tggtggCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTgg                                                                                              <  1:2278613/150‑1 (MQ=255)

                                                          gtggCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGAAAACGCTGGtt                                                                                            >  2:163363/1‑150 (MQ=255)

                                                             gCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTcct                                                                                         >  2:2389084/1‑148 (MQ=255)

                                                                  gggTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTTGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACg                                                                                    <  1:161264/150‑1 (MQ=255)

                                                                         gtgCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AAcc                                                                            >  2:1606353/1‑150 (MQ=255)

                                                                           gCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGCGCCG‑‑CGGCACCATTCGCGCCACCCTCCCGTTTCGCGTGGGTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGa                                                                          <  1:2389084/150‑1 (MQ=255)

                                                                            cACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAg                                                                         >  1:85650/1‑150 (MQ=255)

                                                                             aCCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGc                                                                        >  1:765790/1‑150 (MQ=255)

                                                                              ccAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCa                                                                       >  1:1186845/1‑150 (MQ=255)

                                                                              ccAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTG‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCa                                                                       >  2:2277511/1‑150 (MQ=255)

                                                                               cAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCg                                                                                                                <  2:1373959/109‑1 (MQ=255)

                                                                               cAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCg                                                                                                                >  1:1373959/1‑109 (MQ=255)

                                                                               cAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAg                                                                      >  1:749394/1‑150 (MQ=255)

                                                                                aGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACAGCCGGCTACCCAGAGG‑‑ACCCCCCCGTACCCCGCTGCCCGGT‑CTGCGCTTCGTTCTTCTGTGTTG‑GTAATCTCTGGTTCATCCACGGTG‑AACCGAGCAgg                                                                     <  2:2103063/150‑1 (MQ=255)

                                                                                 gATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAggg                                                                    >  1:1509762/1‑150 (MQ=255)

                                                                                      gCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAgg                                                                     <  2:104690/144‑1 (MQ=255)

                                                                                      gCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAgg                                                                     >  1:104690/1‑144 (MQ=255)

                                                                                         ctGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCa                                                            <  1:1255026/150‑1 (MQ=255)

                                                                                         ctGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGAG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCa                                                            <  1:761134/150‑1 (MQ=255)

                                                                                             tAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGC‑T‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGAt                                                       >  1:628643/1‑150 (MQ=255)

                                                                                                ctagcagcGCTAGGCGTCGCTCGCCTCTGGAACCGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCa                                                     <  2:692119/148‑1 (MQ=255)

                                                                                                caagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCa                                                     <  1:305028/150‑1 (MQ=255)

                                                                                                caagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGAAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCa                                                     <  1:163363/150‑1 (MQ=255)

                                                                                                 aagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGA‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAg                                                    >  1:158370/1‑150 (MQ=255)

                                                                                                  agcagcACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAgg                                                   <  2:1034618/150‑1 (MQ=255)

                                                                                                  agcagcACTAAGCGTCACTCGCCTCTGCAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAgg                                                   <  2:1271535/150‑1 (MQ=255)

                                                                                                   gcagcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAggg                                                  >  1:1478211/1‑150 (MQ=255)

                                                                                                    cagcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGc                                                 <  1:1129320/150‑1 (MQ=255)

                                                                                                     agcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAgg                                                                     <  1:604287/129‑1 (MQ=255)

                                                                                                     agcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAgg                                                                     >  2:604287/1‑129 (MQ=255)

                                                                                                     agcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGcc                                                >  1:113824/1‑150 (MQ=255)

                                                                                                      gcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCa                                               >  2:173613/1‑150 (MQ=255)

                                                                                                      gcaCTAAGCGTCACTCGACTCTGGAAACGGCCGGCTCCCTTGGGC‑‑AAACCGCCGTTTC‑AATTTTCGCTCGTTGCTCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCa                                               <  1:1224148/150‑1 (MQ=255)

                                                                                                          tAAGCGTGACTCGCCTCTGTAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGAt                                           <  2:1996129/150‑1 (MQ=255)

                                                                                                          tAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGAt                                           >  2:2048820/1‑150 (MQ=255)

                                                                                                             gCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGANGGc                                        <  2:1509762/150‑1 (MQ=255)

                                                                                                               gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTg                                                                                               >  2:431772/1‑94 (MQ=255)

                                                                                                               gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTg                                                                                               <  1:431772/94‑1 (MQ=255)

                                                                                                               gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGa                                      <  2:1567108/150‑1 (MQ=255)

                                                                                                               gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGa                                      >  1:1342160/1‑150 (MQ=255)

                                                                                                               gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATCTGGAAACGCTGGTGAATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGa                                      >  2:1301332/1‑150 (MQ=255)

                                                                                                                 cACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAgg                                    <  2:158370/150‑1 (MQ=255)

                                                                                                                 cACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAgg                                    <  1:1028111/150‑1 (MQ=255)

                                                                                                                    tCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGGTGGGC‑CTGGGCTG‑TTTCTGCCGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGTATGGCGAGGGCg                                 >  2:1326719/1‑150 (MQ=255)

                                                                                                                      gCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGAt                               <  1:395678/150‑1 (MQ=255)

                                                                                                                         tctGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGC‑T‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAg                           <  2:628643/150‑1 (MQ=255)

                                                                                                                          ctGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAg                           >  2:2255262/1‑150 (MQ=255)

                                                                                                                          ctGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGCCCAGGATGGCGAGGGCGATGTAg                           <  2:1186845/150‑1 (MQ=255)

                                                                                                                           tGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCa                                                                       <  2:821638/105‑1 (MQ=255)

                                                                                                                           tGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCa                                                                       >  1:821638/1‑105 (MQ=255)

                                                                                                                           tGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGACGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGc                                                                                                                 <  1:1192076/64‑1 (MQ=255)

                                                                                                                             gAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTc                        >  2:1999701/1‑150 (MQ=255)

                                                                                                                                aCGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTc                     >  2:301122/1‑150 (MQ=255)

                                                                                                                                   gccggcTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTT‑TTTAATGATTTAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACg                  >  1:1970954/1‑150 (MQ=255)

                                                                                                                                        cTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGt             <  2:747394/150‑1 (MQ=255)

                                                                                                                                          cccTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTgc           <  2:2192782/150‑1 (MQ=255)

                                                                                                                                           ccTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAggg                                   >  2:1747173/1‑125 (MQ=255)

                                                                                                                                           ccTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAggg                                   <  1:1747173/125‑1 (MQ=255)

                                                                                                                                           ccTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTATTCACGGGCGTgcg          >  1:2404232/1‑150 (MQ=255)

                                                                                                                                                ggg‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGc     <  1:333864/150‑1 (MQ=255)

                                                                                                                                                  g‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGCaa   <  2:1342160/150‑1 (MQ=255)

                                                                                                                                                  g‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGCaa   <  1:982532/150‑1 (MQ=255)

                                                                                                                                                     aCCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGCAAg  >  2:1766726/1‑150 (MQ=255)

CTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGG‑‑ACCCGGCCGTTTCGCGTTGTTGGGC‑CTGGGCTT‑TTTCTGCGGGCATGTGGAAACGCTGGTTCATCCACGGTG‑AACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCATGCAAG  >  NC_002947/2890340‑2890636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`