| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,203,408 | A→C | 6.1% | Q39P (CAG→CCG) ‡ | PP_2810 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,203,408 | 0 | A | C | 6.1% | 271.4 / 5.9 | 95 | Q39P (CAG→CCG) ‡ | PP_2810 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (48/41); new base C (2/4); total (50/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GCCGGTCCAAGCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAGTT > NC_002947/3203260‑3203555 | gcCGGTCCAAGCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAg > 1:2233379/1‑150 (MQ=255) aaGCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGAGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGa < 2:263864/150‑1 (MQ=255) gCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCCTGGGGCGCAgc < 2:104547/150‑2 (MQ=255) gCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTCCGCCCCCTGGGGCGCAgc < 1:1406772/150‑2 (MQ=255) cccTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTAGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGgc < 2:68863/150‑1 (MQ=255) cTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGgcgc > 2:1672997/1‑150 (MQ=255) ttCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCt > 2:163486/1‑150 (MQ=255) ggATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa < 1:2357663/150‑1 (MQ=255) aTCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGt < 1:481396/150‑1 (MQ=255) ctccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAg > 2:1061196/1‑131 (MQ=255) ctccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAg < 1:1061196/131‑1 (MQ=255) ctccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa > 2:1801933/1‑150 (MQ=255) ctccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa > 1:1806283/1‑150 (MQ=255) tccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCACAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa < 2:1126677/149‑1 (MQ=255) tccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATGTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCACAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa > 1:1126677/1‑149 (MQ=255) tccAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCAGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGAc > 1:1561932/1‑150 (MQ=255) cAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGAcgc > 1:1546340/1‑150 (MQ=255) aaaCAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCATTGTTGCCTCGACCGCGATCTGTTTGATACAAGCTGCTCCCCAGGGGGCGGAGGCGCTGGGTCCGAAGTTGACGCCGCTg > 1:1117695/1‑150 (MQ=255) aCAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCATGCATCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTggg > 1:2274499/1‑150 (MQ=255) aaGTCACTGCACGGTCGGAAAGTGCAGTCTCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgnggg < 2:1496169/150‑1 (MQ=255) aGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgggggg < 1:343949/150‑1 (MQ=255) gTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCGGGGGGGc > 1:957094/1‑150 (MQ=255) tCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCg > 2:1391509/1‑150 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGc > 2:369247/1‑110 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGc < 1:369247/110‑1 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCgag < 1:837996/150‑1 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCgag > 2:157249/1‑150 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTCCGCCCCCTGGGGCGCAg > 2:1568974/1‑114 (MQ=255) aCTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTCCGCCCCCTGGGGCGCAg < 1:1568974/114‑1 (MQ=255) tGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGATGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGagag > 1:1202974/1‑150 (MQ=255) tGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGagag > 2:835236/1‑150 (MQ=255) gAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgggg < 1:1642399/132‑1 (MQ=255) gAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgggg > 2:1642399/1‑132 (MQ=255) gAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACACTAACGGAAACGACCGCGATCTGTGCCTGACAGTCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGt > 1:1486313/1‑150 (MQ=255) tgtCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa > 1:276523/1‑111 (MQ=255) tgtCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa < 2:276523/111‑1 (MQ=255) tgtCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAg > 1:1174334/1‑150 (MQ=255) aTCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgg > 1:1321654/1‑119 (MQ=255) aTCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTgg < 2:1321654/119‑1 (MQ=255) cccgccGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTc < 2:443054/150‑1 (MQ=255) cgccgTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCa > 1:29354/1‑150 (MQ=255) cgccgTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCa < 2:1486313/150‑1 (MQ=255) gccgTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa < 2:624926/97‑1 (MQ=255) gccgTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa > 1:624926/1‑97 (MQ=255) gccgTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCTCCAGTTCTAGCGGCGATATTCCAg > 2:1212068/1‑150 (MQ=255) ttttCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTggg < 1:421594/150‑1 (MQ=255) aGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAg > 1:1999852/1‑150 (MQ=255) ggCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGc > 2:809277/1‑150 (MQ=255) cAGCTGCCGGTTACCCCTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCa < 2:2274499/150‑1 (MQ=255) gctgctGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAgg > 1:1838029/1‑150 (MQ=255) ctgctgGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAggg < 1:1801933/150‑1 (MQ=255) ctgGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGgcag > 1:864243/1‑150 (MQ=255) gTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGACTGGGCACAGCCAGGGcagcag < 2:29354/150‑1 (MQ=255) aCCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa < 1:2429052/76‑1 (MQ=255) aCCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGa > 2:2429052/1‑76 (MQ=255) ccTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGc > 2:706229/1‑150 (MQ=255) ccTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGc > 2:1742632/1‑150 (MQ=255) ttGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAg > 1:2259300/1‑150 (MQ=255) cGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGAt < 2:2233379/150‑1 (MQ=255) gCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGTGGTAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATgg > 1:748211/1‑150 (MQ=255) ccTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa < 1:1728123/150‑1 (MQ=255) tCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGt > 2:890618/1‑150 (MQ=255) ccGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGc > 2:2210287/1‑120 (MQ=255) ccGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGc < 1:2210287/120‑1 (MQ=255) ccGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACg > 1:450695/1‑150 (MQ=255) gATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGcat < 2:1174334/150‑3 (MQ=255) aTCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAg < 1:1391509/150‑1 (MQ=255) aTCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAg < 2:1999852/150‑1 (MQ=255) tCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCa < 1:2035872/148‑1 (MQ=255) tCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCa > 2:2035872/1‑148 (MQ=255) tGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTa > 2:1827235/1‑150 (MQ=255) ttCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACg > 1:302903/1‑150 (MQ=255) ttCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGAAAGATGCGGAGTTTACGCGTCTGGGGGGCGAGATCGCCGCCACATCCATTCGCTGTTGTTCATCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTGCGGCCAGGTACg > 1:2388003/1‑150 (MQ=255) tCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGa < 1:30631/150‑1 (MQ=255) tCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCGGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAAGGGGCAGGATGGAGTTACGGCCAGGTACGa < 2:957094/150‑1 (MQ=255) gTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCGTTTCGAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAggg < 1:157249/150‑1 (MQ=255) gTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAggg < 1:163486/150‑1 (MQ=255) aCAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGCAGCAGCCGGGGGGCGAGAGCCGCGTCAGTTCTAGCGGCGATATTCCATCCTTGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGa < 2:864243/150‑1 (MQ=255) aCAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGa < 2:302903/150‑1 (MQ=255) ggCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCa < 1:890618/150‑1 (MQ=255) gCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa > 2:939309/1‑35 (MQ=255) gCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGaa < 1:939309/35‑1 (MQ=255) gCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCAc > 1:279279/1‑150 (MQ=255) ctccgcCCCCTGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGa < 1:569596/137‑1 (MQ=255) tccgcCCCCTGGGGCGGAGGCGCTGGGTTCGAAGTTGATGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGGTACGGCCAGGTACGAGGGGAGCACTg > 1:1183255/3‑150 (MQ=255) tGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa < 2:2098825/122‑1 (MQ=255) tGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa > 1:2098825/1‑122 (MQ=255) ccccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAg < 2:1546340/150‑1 (MQ=255) cccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa > 2:530300/1‑117 (MQ=255) cccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa < 1:530300/117‑1 (MQ=255) cccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAGt < 1:809277/150‑1 (MQ=255) ccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAGtt > 1:1787437/1‑150 (MQ=255) ccAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAGtt > 1:128442/1‑150 (MQ=255) cAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa < 2:1181988/115‑1 (MQ=255) cAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGa > 1:1181988/1‑115 (MQ=255) | GCCGGTCCAAGCCCTTCGTTTGAGGATCCTCCAATGAAACAAGTCACTGCACGGTCGGAAAGTGTCGTATCCGCCCGCCGTATTTTCAGGCAGCTGCTGGTTACCCTTGCGGCCTCGACCGCGATCTGTTCGGTACAGGCTGCGCCCCAGGGGGCGGAGGCGCTGGGTTCGAAGTTGACGCCGCTGGGGGGCGAGAGCGCCGCCAGTTCTAGCGGCGATATTCCAGCCTGGGCACAGCCAGGGCAGCAGGGGGCAGGATGGAGTTACGGCCAGGTACGAGGGGAGCACTGGAAGTT > NC_002947/3203260‑3203555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |