New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731205 =	28 (0.790)	7 (0.250)	7/216	2.5	26.8%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731297 =	16 (0.570)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

CGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCC  >  NC_002947/1731064‑1731344                                                                                                                                              |                                                                                                                                            cGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTcg                                                                                                                                     >  2:200579/1‑150 (MQ=255)  gAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTcgc                                                                                                                                    >  2:770967/1‑150 (MQ=255)     tgggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgctggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCggg                                                                                                                                 >  1:703110‑M1/138‑150 (MQ=255)      gggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGc                                                                                                                                <  2:179312‑M1/14‑1 (MQ=255)      ggCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGc                                                                                                                                >  2:110820/1‑150 (MQ=255)           gcgatgttggtggtgcagtcgttgccttatgtggcagcgctggtgatggcgtttctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGcc                                                                                                                           >  1:323056‑M1/132‑150 (MQ=255)              atgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGc                                                                                                                        <  2:322426‑M1/22‑1 (MQ=255)                       cAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGCCTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAgg                                                                                                               <  2:538009/150‑1 (MQ=255)                           agtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                           <  1:161593‑M1/35‑1 (MQ=255)                            cAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTg                                                                                                          <  2:640410/150‑1 (MQ=255)                            cAGTTGAAGGGTAGGCGAGAGCGCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTACGGCTAGCCTGGCGCAATGAGGGTTACGCTCTCTGCCACAGGTACTg                                                                                                          >  2:529915/1‑150 (MQ=255)                             aGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                                                                                     >  1:749831/1‑138 (MQ=255)                             aGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                                                                                     <  2:749831/138‑1 (MQ=255)                                     ggTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGctct                                                                                                 <  1:110820/150‑1 (MQ=255)                                            gagaGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGcc                                                                                          <  1:716466/150‑1 (MQ=255)                                               agCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGGGGTGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCtgt                                                                                       <  1:529915/150‑1 (MQ=255)                                                    ggagatgccgttcctggcgtagatgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCACTCCCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCaa                                                                                  >  2:122301‑M1/91‑150 (MQ=255)                                                      cAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCGTGCCCGcga                                                                                                                      >  1:730515/1‑110 (MQ=255)                                                      cAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCGTGCCCGcga                                                                                                                      <  2:730515/112‑3 (MQ=255)                                                         gggCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCgg                                                                             <  1:770967/150‑1 (MQ=255)                                                           gCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTg                                                                           >  1:548878/1‑150 (MQ=255)                                                              ttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGa                                                                        >  2:161593‑M1/81‑150 (MQ=255)                                                                cctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGc                                                                      <  1:360428‑M1/72‑1 (MQ=255)                                                                  tgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg                                                                    >  1:514881‑M1/77‑150 (MQ=255)                                                                  tGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACACCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg                                                                    >  2:281410/1‑150 (MQ=255)                                                                      gtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGt                                                                >  2:360428‑M1/73‑150 (MQ=255)                                                                          tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTccc                                                                                                                    >  2:85113/1‑94 (MQ=255)                                                                          tCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTccc                                                                                                                    <  1:85113/94‑1 (MQ=255)                                                                            cGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcgc                                                          <  1:254340/150‑1 (MQ=255)                                                                                aagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAAt                                                      >  2:765760‑M1/63‑150 (MQ=255)                                                                                         gaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCgg                                                                                                                                  <  2:19455‑M1/12‑1 (MQ=255)                                                                                         gaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCgg                                                                                                                                  >  1:19455‑M1/54‑65 (MQ=255)                                                                                             gggAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCTGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTAc                                                                                                            >  2:490744/1‑83 (MQ=255)                                                                                             gggAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCTGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTAc                                                                                                            <  1:490744/83‑1 (MQ=255)                                                                                                                 tCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGc                     >  1:507334/1‑150 (MQ=255)                                                                                                                       atCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGca                                              >  2:6564/1‑119 (MQ=255)                                                                                                                       atCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGca                                              <  1:6564/119‑1 (MQ=255)                                                                                                                           aaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAg                                           <  1:75514/118‑1 (MQ=255)                                                                                                                           aaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAg                                           >  2:75514/1‑118 (MQ=255)                                                                                                                            aTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCtt          >  2:349466/1‑150 (MQ=255)                                                                                                                                    gggCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGcc  <  1:349466/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            CGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCC  >  NC_002947/1731064‑1731344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.