New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 90374	14 (1.070)	3 (0.260)	3/242	1.2	18.0%	intergenic (+49/+73)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90397	15 (1.300)					intergenic (+72/+50)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/90212‑90374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCGGTAAGA  <  NC_002947/90397‑90249                                                                                                                                                                                                                                                                                                                          GAGGGGAGATTGCCCACGGAACGCGGCTATTACTTAGGCTTAGCGCGGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGAAGGAGCGCAGCCTTTGAGATGTTCGGGCCGCTTTGCGGCCCATCGCGACCCAA                                                                                                                                                                    >  2:147234/1‑150              GCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA                                                                                                                                                       >  1:189785/1‑150              GCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA                                                                                                                                                       >  2:126916/1‑150                                             GCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAG                                                                                                                        <  1:296277/150‑1                                                                      ATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA                                                                                                                         <  1:25258/124‑1                                                                      ATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA                                                                                                                         >  2:25258/1‑124                                                                                                                                                     AAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTT                <  2:134631/150‑1                                                                                                                                                      AGGCCGCTCCCACGTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGAT                                  <  2:52314/131‑1                                                                                                                                                      AGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGAT                                  >  1:52314/1‑131                                                                                                                                                        GCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCG             <  2:206687/150‑1                                                                                                                                                                 ACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGTTCGATCAACGCCCCACGCCGCTTGCGCGGCGGTAA    <  1:231558/150‑1                                                                                                                                                                   ATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCGGTAAGA  <  1:306037/150‑1                                                                                                                                                                                                                                                                                                                          GAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/90212‑90374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccgctcccacaTGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCCGCAAAGCGGCCCCAAAATCTCAAAGGCTGCGCTCCTGCTCCAACCAATCCACAAACCGCTCGATCAACGCCCCACGCCGCTTGCGCGGCGGTAAGA  <  NC_002947/90397‑90249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.