Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,655,692 Δ1 bp 25.0% intergenic (‑96/+56) epd ← / ← tktA D‑erythrose 4‑phosphate dehydrogenase/transketolase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,655,6920T.25.0% 86.6 / 28.8 36intergenic (‑96/+56)epd/tktAD‑erythrose 4‑phosphate dehydrogenase/transketolase A
Reads supporting (aligned to +/- strand):  ref base T (16/11);  new base . (5/4);  total (21/15)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.06e-01

CGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCG  >  NC_002947/5655548‑5655841
                                                                                                                                                 |                                                                                                                                                     
cGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCtgtg                                                                                                                                                  <  1:369374/150‑1 (MQ=255)
       gCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCgg                                                                                                                                           <  2:60593/150‑1 (MQ=255)
         cATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGa                                                                                                                                               <  2:259890/144‑1 (MQ=37)
         cATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGa                                                                                                                                               >  1:259890/1‑144 (MQ=37)
           tAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCtt                                                                                                                                       <  2:837232/150‑1 (MQ=255)
                     gTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAAt                                                                                                                             >  1:637995/1‑150 (MQ=255)
                      tGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAATCCCGCTCCCACAGGGTTTCATGCAACCTCTGTgg                                                                                                                                                 >  2:254129/1‑129 (MQ=255)
                      tGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAATCCCGCTCCCACAGGGTTTCATGCAACCTCTGTgg                                                                                                                                                 <  1:254129/129‑1 (MQ=255)
                      tGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGCgg                                                                                                                                           <  2:481332/135‑1 (MQ=37)
                      tGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGCgg                                                                                                                                           >  1:481332/1‑135 (MQ=37)
                           cTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCTGGCTTGCCCGCGAATGAAGGc                                                                                                                       <  1:23052/150‑1 (MQ=255)
                                   ggACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCgg                                                                                                                                           <  1:1073674/122‑1 (MQ=255)
                                   ggACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCgg                                                                                                                                           >  2:1073674/1‑122 (MQ=255)
                                               aTTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCttt                                                                                                   <  1:199763/150‑1 (MQ=255)
                                                ttCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGc                                                                                                                                             >  1:534794/1‑107 (MQ=21)
                                                ttCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGc                                                                                                                                             <  2:534794/107‑1 (MQ=21)
                                                           cGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGATTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTc                                                                                       >  1:628788/1‑150 (MQ=255)
                                                                           tcgtcAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGa                                                                                                                                               >  1:360571/1‑78 (MQ=14)
                                                                           tcgtcAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGa                                                                                                                                               <  2:360571/78‑1 (MQ=14)
                                                                                                             cgGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAAct                                     <  2:637995/150‑1 (MQ=255)
                                                                                                                      ccGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACGGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACa                            >  1:863180/1‑150 (MQ=255)
                                                                                                                      ccGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACa                            >  1:48285/1‑150 (MQ=255)
                                                                                                                      ccGCTCACACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACa                            >  1:751357/1‑150 (MQ=255)
                                                                                                                      cagCTCCCACAGAGAATCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACa                            >  2:68395/3‑150 (MQ=255)
                                                                                                                        gCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGaagg                                                                                                                            <  2:210132/52‑3 (MQ=255)
                                                                                                                        gCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGaagg                                                                                                                            >  1:210132/1‑50 (MQ=255)
                                                                                                                            ccACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCtt                                  >  2:987436/1‑138 (MQ=255)
                                                                                                                            ccACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCtt                                  <  1:987436/138‑1 (MQ=255)
                                                                                                                             cacagaggTTGCATGAAACCCTGTGGGAGCGGGCTTGCCCGCGAAT‑‑‑‑GCCACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGcc                 >  1:817628/7‑150 (MQ=25)
                                                                                                                              acaGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGaa                    >  1:573511/1‑150 (MQ=255)
                                                                                                                                           gCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATGTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGAc        >  2:597310/1‑150 (MQ=255)
                                                                                                                                           gCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGAc        >  2:751448/1‑150 (MQ=255)
                                                                                                                                             aaCCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAgg                                                  <  2:1086759/106‑1 (MQ=255)
                                                                                                                                             aaCCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAgg                                                  >  1:1086759/1‑106 (MQ=255)
                                                                                                                                               ccTCTGTGGGAGCGGGCTTGCCCTCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGTCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCAc    >  2:551557/1‑150 (MQ=255)
                                                                                                                                               ccTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGTCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCAc    >  2:551656/1‑150 (MQ=255)
                                                                                                                                                 tctGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCg  >  1:784167/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
CGATACGGCCATAACCGTTGAGTGCAACTTTGTAGGGACGGTGGGGCATTCGGGGCTCACGAGACAGTTCAATTGTCGTCAGCCTGCGGAATTTGCGGTGTGGCATTCGCGGGCAAGCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTCACCG  >  NC_002947/5655548‑5655841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: