Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,915,640:1 +A 13.3% intergenic (+26/‑263) fklB‑II → / → PP_1715 FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,915,6401.A13.3% 145.2 / 20.6 45intergenic (+26/‑263)fklB‑II/PP_1715FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (19/20);  new base A (3/3);  total (22/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.74e-01

CGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAC  >  NC_002947/1915502‑1915779
                                                                                                                                            |                                                                                                                                           
cGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAAAATTGGCTGGTTGTCGGAAACGCCCCACATTGTTggg                                                                                                                                  >  1:451802/1‑150 (MQ=255)
cGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGCACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACCTTGGCTGGTTGTCGGAAACTCCCCACATTGTTggg                                                                                                                                  <  2:223321/150‑1 (MQ=255)
 ggCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTgggg                                                                                                                                 >  1:377866/1‑150 (MQ=255)
  gCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGc                                                                                                                                <  2:53658/150‑1 (MQ=255)
       cTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttc                                                                                                                           <  2:660469/150‑2 (MQ=255)
       cTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttc                                                                                                                           >  1:660469/1‑149 (MQ=255)
        tCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTc                                                                                                                          >  2:828253/1‑150 (MQ=255)
          ggTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTGGCAAGGTGCCGAGCCGCAGGCCGACGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGt                                                                                                                        <  2:186078/150‑1 (MQ=255)
                ggTGTTGGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGGAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGc                                                                                                                  >  2:882864/1‑150 (MQ=255)
                 gtgtTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGcc                                                                                                                 >  2:1015460/1‑150 (MQ=255)
                  tgtNCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCg                                                                                                                >  2:698426/1‑150 (MQ=255)
                    ttCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGttt                                                                                                                      >  1:142029/1‑142 (MQ=255)
                    ttCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGttt                                                                                                                      <  2:142029/142‑1 (MQ=255)
                       gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTGTTCGTTTGTGCGGATTgg                                                                                                           >  2:1019022/1‑150 (MQ=255)
                       gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttccgacaa                                                                                                                     <  1:291391/140‑8 (MQ=38)
                       gATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttccgacaa                                                                                                                     >  2:291391/1‑133 (MQ=38)
                        aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCcaacaat                                                                                                                                       >  2:887168/1‑116 (MQ=255)
                        aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCcaacaat                                                                                                                                       <  1:887168/121‑6 (MQ=255)
                        aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGa                                                                                                          <  1:828253/150‑1 (MQ=255)
                            ggAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGaa                                                                                                      <  1:99987/150‑1 (MQ=255)
                             gAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAAc                                                                                                     <  2:882152/150‑1 (MQ=255)
                                 tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGc                                                                                                 >  2:111431/1‑150 (MQ=255)
                                        cATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttc                                                                                                                           >  1:144264/1‑116 (MQ=38)
                                        cATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATGTGGGGCGtttc                                                                                                                           <  2:144264/117‑2 (MQ=38)
                                               gACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTg                                                                                   >  1:59287/1‑150 (MQ=255)
                                                 cccGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCGATACAATTTGGGGCGTTTTCGTTTGGTCTGATTGGACGAACCTGCAACAGCTGATACTGTc                                                                                 >  1:738658/1‑150 (MQ=255)
                                                        cAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGaa                                                                          >  2:363826/1‑150 (MQ=255)
                                                           ttGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACAttgtt                                                                                                                                     >  1:653015/1‑88 (MQ=255)
                                                           ttGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACAttgtt                                                                                                                                     <  2:653015/88‑1 (MQ=255)
                                                             gCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACATGCAACAGCTGATACTGTCCGAGGAAATGCa                                                                     >  2:671144/1‑150 (MQ=255)
                                                              gaaGGTGCTGAGCCGCAGTCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTGGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAg                                                                    <  2:451802/149‑1 (MQ=255)
                                                              cAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGCAAATGCAg                                                                    >  2:610069/1‑150 (MQ=255)
                                                                    gCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaa                                                              <  2:2001/150‑1 (MQ=255)
                                                                    gCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaa                                                              <  2:377866/150‑1 (MQ=255)
                                                                       gAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTgaagaa                                                           >  2:775083/1‑150 (MQ=255)
                                                                             cAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGa                                                     <  1:363826/150‑1 (MQ=255)
                                                                              aGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGAt                                                    <  1:698426/150‑1 (MQ=255)
                                                                                      gCCACTGAAGAAGTACCTGACAAGTAACAGTGACTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTAGACGAATCTGCAAGAGCTGAGTCTTTCCGATGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGa                                            <  2:511038/150‑1 (MQ=255)
                                                                                                           aaGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAg                       <  1:1015460/150‑1 (MQ=255)
                                                                                                              tAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTa                    >  1:206428/1‑150 (MQ=255)
                                                                                                                 cATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc                 <  1:111431/150‑1 (MQ=255)
                                                                                                                 cATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc                 <  2:206428/150‑1 (MQ=255)
                                                                                                                 cATTGGCTGGTTGTCGGAAACGCCCAACGTTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTc                 <  1:1019022/150‑1 (MQ=255)
                                                                                                                          gTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTACCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAgg                      <  1:895405/136‑1 (MQ=255)
                                                                                                                          gTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTACCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAgg                      >  2:895405/1‑136 (MQ=255)
                                                                                                                               cGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGa   <  1:1105869/150‑1 (MQ=255)
                                                                                                                                ggAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAc  >  1:662905/1‑150 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCCACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGTCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGAC  >  NC_002947/1915502‑1915779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: