New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	721258 =	15 (0.350)	12 (0.280)	11/248	NT	45.0%	intergenic (‑60/+47)	PP_0614/PP_0615	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/ABC transporter ATP‑binding protein
	?	NC_002947	1298188 =	NA (NA)					intergenic (+41/+388)	PP_1133/PP_1134	transposase/hypothetical protein

GCCACTATGTGCTGGAGCAGGGCCGCGTCGCTTACCAGGGCAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/721408‑721258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGC  >  NC_002947/1298188‑1298336                                                                                                                                                                                                                                                                                                              GCCACTATGTGCTGGAGCAGGGCCGCGTCGCTTACCAGGGCAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAATAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGGGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGA                                                                                                                                                        >  1:353095/1‑150                       CCGCGTCGCTTACCAGGGCAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCT                                                                                                                                  >  1:788038/1‑150                         GCGTCGCTTACCAGGGCAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGC                                                                                                                                <  2:300090/150‑1                                         gAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAA                                                                                                                <  1:839424/149‑1                                               GGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGAT                                                                                                          >  2:404177/1‑150                                                                        ATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGA                                                                                 >  1:1126127/1‑150                                                                                                      TGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGACCTAGAAAAGCATTCGCCGACT                                                   >  1:544009/1‑150                                                                                                        ACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGA                                                 >  2:639723/1‑150                                                                                                                        CTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGCCAGTGAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGag                                 >  1:561033/1‑148                                                                                                                        CTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                                                >  1:733052/1‑119                                                                                                                        CTGTACCGGCCACTGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                                                <  2:733052/119‑1                                                                                                                                     TGCCAGGCCTTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGAAGTGGGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTG                    >  1:74491/1‑150                                                                                                                                              TTTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTC           <  1:404177/150‑1                                                                                                                                                  TAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAA       >  1:360774/1‑150                                                                                                                                                   AGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAAT      >  1:870460/1‑150                                                                                                                                                     GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGC    <  1:793043/150‑1                                                                                                                                                     GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGC    >  2:1018905/1‑150                                                                                                                                                     GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTC                                     <  2:785529/117‑1                                                                                                                                                     GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTC                                     >  1:785529/1‑117                                                                                                                                                       GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCTAGAACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGC  <  1:911746/150‑1                                                                                                                                                       GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGC  <  2:393863/150‑1                                                                                                                                                       GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGC  >  2:684607/1‑150                                                                                                                                                                                                                                                                                                              GCCACTATGTGCTGGAGCAGGGCCGCGTCGCTTACCAGGGCAGTGCGGCGCAGTTCCGCGAGGACCCGAGCATCAAGAACCGTTACCTGGCCCTTAGCGCCTGACCCGACCGTGCTTACCTGTACCGGCCACTGCCAGGCCTTTGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/721408‑721258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCCAATGCGC  >  NC_002947/1298188‑1298336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.