New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 728713 | 28 (0.650) | 6 (0.150) | 5/240 | NT | 18.9% | coding (199/963 nt) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase |
? | NC_002947 | = 728729 | 25 (0.610) | coding (215/963 nt) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase |
CCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/728565‑728713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGAC < NC_002947/728729‑728581 CCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGG > 2:984039/1‑150 CCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGG > 2:984055/1‑150 CGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAG < 1:984039/150‑1 CGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAG < 1:984055/150‑1 AAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGA < 2:129942/110‑1 AAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCAGGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGA > 1:129942/1‑110 ATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGG > 1:236435/1‑37 ATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGG < 2:236435/37‑1 CCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGG > 1:788015/1‑150 TGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCG > 1:1101054/1‑150 GGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGAC < 1:213301/150‑1 CCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/728565‑728713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCGGCGAC < NC_002947/728729‑728581 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |