New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 743469 | 64 (1.480) | 3 (0.080) +AGGCAGGTCTGATTTCGC |
4/218 | NT | 5.2% | intergenic (+145/+129) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein |
? | NC_002947 | = 1431465 | NA (NA) | intergenic (+74/+78) | PP_1252/PP_1253 | group II intron‑encoding maturase/ArsR family transcriptional regulator |
GCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCGCGAAATCAGACCTGCCTTGTGTGCCCGCTATGTGAAGCAACCTTCGGTTGCGTTACATAGCGGACACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743328‑743469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTT < NC_002947/1431465‑1431319 |||||||||||||||||| cCCGTGTACGGAACCGTACGCCCGTTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTAGCCGATTGCGCGAAATCAGACCTGCCTTGTGTGCCCGCGATGTAACGCAACCGAAGGTTGCTTCACATAGCGGGCACACAAGGCAGGT < 2:564866/149‑1 GCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGTCTCCTACTCGATTGCGCGAAATCAGACCTGCCTTGTGTGCCCGCTATGTAACGCAACCGAAGGTTGCTTCACATAGCGGGCACACAAGGCAGGT < 2:564653/150‑1 CCCGCTATGTGAAGCAACCTTCGGTTGCGTTACATAGCGGACACACAAGGCAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGC > 2:846991/1‑150 AAGCAACCTTCGGTTGCGTTACATAGCGGACACACAAGGCAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTC > 1:774800/1‑115 AAGCAACCTTCGGTTGCGTTACATAGCGGACACACAAGGCAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTC < 2:774800/115‑1 ACAAGGCAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGC < 2:1095235/150‑1 ACAAGGAAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGC < 2:80002/150‑1 GGCAGGTCTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTTCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGT < 2:759348/150‑1 CTGATTTCGCGCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAG < 2:803868/150‑1 CGCGCAATCGAGTAGGAGGCGGATTCAAAGCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTT < 2:985740/150‑1 |||||||||||||||||| GCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTGCGCGAAATCAGACCTGCCTTGTGTGCCCGCTATGTGAAGCAACCTTCGGTTGCGTTACATAGCGGACACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743328‑743469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTT < NC_002947/1431465‑1431319 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |