New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1197531 = | 36 (0.830) | 4 (0.090) | 4/250 | NT | 9.9% | coding (1586/1755 nt) | xcpQ | type II secretion pathway protein XcpQ |
? | NC_002947 | 1197561 = | 37 (0.870) | coding (1616/1755 nt) | xcpQ | type II secretion pathway protein XcpQ |
CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1197570‑1197531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG > NC_002947/1197561‑1197665 CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG < 1:1119129/145‑1 CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG > 2:1119129/1‑145 GGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGC > 1:154487/1‑96 GGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGC < 2:154487/96‑1 CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1197570‑1197531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG > NC_002947/1197561‑1197665 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |