New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1229855	25 (0.580)	4 (0.100)	4/244	NT	14.3%	coding (3029/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	= 1229862	24 (0.580)					coding (3036/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein

AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1229810‑1229855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatATGTTCA‑ATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC  <  NC_002947/1229862‑1229757                                                                                                                                                           AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCA‑ATGCCGTGAG                                                                                           >  1:237871/1‑63 AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCA‑ATGCCGTGAG                                                                                           <  2:237871/63‑1                   ATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC  <  1:572431/134‑1                   ATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC  >  2:572431/1‑134                                                                                                                                                           AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1229810‑1229855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatATGTTCA‑ATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC  <  NC_002947/1229862‑1229757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.