| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1357725 = | 51 (1.180) | 3 (0.070) | 3/244 | NT | 5.8% | coding (900/1608 nt) | PP_1182 | sensor histidine kinase |
| ? | NC_002947 | 1357766 = | 49 (1.180) | coding (941/1608 nt) | PP_1182 | sensor histidine kinase | |||||
GCTTTCGATCATCTCCAAGCCAAAGCGCAGGCGCGCCACCGGCGTGCGAAGCTCGTGGGACACCGCTCGCACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1357833‑1357725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCTTTGGCTTGGAGATGATCGAAAGCGCCACGACTGAACAGGTGCGGGCTAAG > NC_002947/1357766‑1357860 GCTTTCGATCATCTCCAAGCCAAAGCGCAGGCGCGCCACCGGCGTGCGAAGCTCGTGGGACACCGCTCGCACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAG < 1:656656/105‑1GCTTTCGATCATCTCCAAGCCAAAGCGCAGGCGCGCCACCGGCGTGCGAAGCTCGTGGGACACCGCTCGCACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAG > 2:656656/1‑105 GTGGGACACCGCTCGCACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCTTTGGCTTGGAGATGATCGAAAGCGCCACGACTGAACAGGTGCGGGCTAAG > 1:36436/1‑150 CACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCTTTGGCTTG < 1:791692/93‑1 CACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCTTTGGCTTG > 2:791692/1‑93 GGTGCGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCT > 1:783251/1‑50 GGTGCGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCT < 2:783251/50‑1 GCTTTCGATCATCTCCAAGCCAAAGCGCAGGCGCGCCACCGGCGTGCGAAGCTCGTGGGACACCGCTCGCACCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1357833‑1357725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcGAGCGGTGTCCCACGAGCTTCGCACGCCGGTGGCGCGCCTGCGCTTTGGCTTGGAGATGATCGAAAGCGCCACGACTGAACAGGTGCGGGCTAAG > NC_002947/1357766‑1357860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |