New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2786795 | 27 (0.620) | 3 (0.070) | 3/236 | NT | 10.7% | intergenic (‑84/‑238) | alx/ahpC | alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit |
? | NC_002947 | = 2786823 | 25 (0.620) | intergenic (‑112/‑210) | alx/ahpC | alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit |
GTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2786681‑2786795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatcacGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCTGTC < NC_002947/2786823‑2786676 GTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGTTCTACGCTCAAGCCCATGTGATAC < 1:863235/150‑1 AGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCC > 1:559609/1‑87 AGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCC < 2:559609/87‑1 CTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCAT < 1:351181/59‑1 CTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCAT > 2:351181/1‑59 TCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGA < 1:1128541/109‑1 TCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGA > 2:1128541/1‑109 ACGGGCAAACGGGTCTACGCTCAAGCCCATGTGCTACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCTGTC > 2:467482/1‑150 ACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCTGTC < 2:744293/150‑1 ACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCTGTC < 2:744448/150‑1 GTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2786681‑2786795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatcacGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCTGTC < NC_002947/2786823‑2786676 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |