| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2789272 | 51 (1.180) | 4 (0.090) | 4/248 | NT | 7.1% | coding (1552/1563 nt) | ahpF | alkyl hydroperoxide reductase subunit F |
| ? | NC_002947 | = 2789290 | 55 (1.300) | intergenic (+7/‑160) | ahpF/PP_2441 | alkyl hydroperoxide reductase subunit F/hypothetical protein | |||||
GTACAAGCAGATCGTCATTGCGGTGGGTGAGGGGGCCAAGGCATCGCTGGCGGCCTTTGACCACCTGATTCGGACTTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2789193‑2789272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTACAGGCTTACGCCGGTGCCGAAGTCCGAATCAGGTGGTCAAAGGCCGCCAGCGATGCCTTGGCCCCCTCACCCACCGCAATGACGATCTGCTTGTACGGCACGGTAGTCACGTCACCTGCAGCAAACACACCTGGGATGCTGGTCTGG < NC_002947/2789290‑2789142 GTACAAGCAGATCGTCATTGCGGTGGGTGAGGGGGCCAAGGCATCGCTGGCGGCCTTTGACCACCTGATTCGGACTTCGGTACAGGCTTACGCCGGTGCCGAA < 1:650262/103‑1GTACAAGCAGATCGTCATTGCGGTGGGTGAGGGGGCCAAGGCATCGCTGGCGGCCTTTGACCACCTGATTCGGACTTCGGTACAGGCTTACGCCGGTGCCGAA > 2:650262/1‑103 ACCTGATTCGGACTTCGGCACCGGCGTAAGCCTGTACCGAAGTCCGAATCAGGTGGTCAAAGGCCGCCAGCGATGCCTTGGCCCCCTCACCCACCGCAATGACGATCTGCTTGTACGGCACGG < 1:166783/123‑1 ACCTGATTCGGACTTCGGCACCGGCGTAAGCCTGTACCGAAGTCCGAATCAGGTGGTCAAAGGCCGCCAGCGATGCCTTGGCCCCCTCACCCACCGCAATGACGATCTGCTTGTACGGCACGG > 2:166783/1‑123 GTACAGGCTTACGCCGGTGCCGAAGTCCGAATCAGGTGGTCAAAGGCCGCCAGCGATGCCTTGGCCCCCTCACCCACCGCAATGACGATCTGCTTGTACGGCACGGTAGTCACGTCACCTGCAGCAAACACACCTGGGATGCTGGTCTGG < 1:607790/150‑1 GTACAAGCAGATCGTCATTGCGGTGGGTGAGGGGGCCAAGGCATCGCTGGCGGCCTTTGACCACCTGATTCGGACTTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2789193‑2789272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTACAGGCTTACGCCGGTGCCGAAGTCCGAATCAGGTGGTCAAAGGCCGCCAGCGATGCCTTGGCCCCCTCACCCACCGCAATGACGATCTGCTTGTACGGCACGGTAGTCACGTCACCTGCAGCAAACACACCTGGGATGCTGGTCTGG < NC_002947/2789290‑2789142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |