New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3426005 =	38 (0.880)	3 (0.070)	3/244	NT	7.1%	coding (527/612 nt)	PP_3041	hypothetical protein
	?	NC_002947	3426046 =	42 (1.010)					coding (568/612 nt)	PP_3041	hypothetical protein

CAGCCCTCGGCAAAACGCTTCGCGGTACACCTCTGCACCGTTTGCGTATCCGGTGGGCATAGGCTCAGCTCTGTTTAGTGGATTGTTTCTGGCCAATGGCCTGTTCAAGGTCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3426154‑3426005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTGA  >  NC_002947/3426046‑3426155                                                                                                                                                                                                                                                                      CAGCCCTCGGCAAAACGCTTCGCGGTACACCTCTGCACCGTTTGCGTATCCGGTGGGCATAGGCTCAGCTCTGTTTAGTGGATTGTTTCTGGCCAATGGCCTGTTCAAGGTCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGAC                                                                                                                <  2:433735/150‑1                                                                                                             GGTCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGAT                                                  >  1:222397/1‑104                                                                                                             GGTCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGAT                                                  <  2:222397/104‑1                                                                                                               TCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTGA  >  2:1054264/1‑150                                                                                                                                                   CGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTG   >  1:508965/1‑113                                                                                                                                                   CGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTG   <  2:508965/113‑1                                                                                                                                                                                                                                                                      CAGCCCTCGGCAAAACGCTTCGCGGTACACCTCTGCACCGTTTGCGTATCCGGTGGGCATAGGCTCAGCTCTGTTTAGTGGATTGTTTCTGGCCAATGGCCTGTTCAAGGTCGGAGCTGTTCATGCTGGAGGCTTCGGTGAACACCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3426154‑3426005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTGA  >  NC_002947/3426046‑3426155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.