| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3479798 = | 53 (1.220) | 6 (0.140) | 4/244 | NT | 11.3% | coding (1464/2496 nt) | PP_3090 | OmpA domain‑containing protein |
| ? | NC_002947 | 3479817 = | 43 (1.030) | coding (1445/2496 nt) | PP_3090 | OmpA domain‑containing protein | |||||
AACGCCGGCGCAAGGCCGGGTGGGTGGGCGCCGCCGGCCTGGCGGCACTGGTGCTGTGCAGCCTGTGGGGCTGGTCGTACCTGAACAACCGCGCCACCCTGGCCAGCATTGCCGACGAACTGGCCCAGGCCAAGGCCGACGACCAGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3479949‑3479798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCCCACAGGCTGCACAGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCTGG > NC_002947/3479817‑3479964 AACGCCGGCGCAAGGCCGGGTGGGTGGGCGCCGCCGGCCTGGCGGCACTGGTGCTGTGCAGCCTGTGGGGCTGGTCGTACCTGAACAACCGCGCCACCCTGGCCAGCATTGCCGACGAACTGGCCCAGGCCAAGGCCGACGACCAGGCGG < 1:427761/150‑1AACGCCGGCGCAAGGCCGGGTGGGTGGGCGCCGCCGGCCTGGCGGCACTGGTGCTGTGCAGCCTGTGGGGCTGGTCGTACCTGAACAACCGCGCCACCCTGGCCAGCATTGCCGACGAACTGGCCCAGGCCAAGGCCGACGACCAGGCGG < 1:98940/150‑1 GCCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCG > 1:486371/1‑66 GCCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCG < 2:486371/66‑1 CCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAG < 1:1093202/76‑1 CCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAG < 1:512951/76‑1 CCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAG > 2:1093202/1‑76 CCAAGGCCGACGACCAGGCGGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAG > 2:512951/1‑76 GGCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCCCACAGGCTGCACAGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCT < 1:972670/150‑1 GCCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCCCACAGGCTGCACAGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCTG > 1:1076573/1‑150 GCCGTGGCCTGGGTCTGTTCGTCGGCAATGTGGGGCAGGGTGGCGCGGTTGTTCAGGTACGAGCAGCGCCGCAGGCTGCACTGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCTG < 2:405261/150‑1 CCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCCCACAGGCTGCACAGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCTGG > 1:479467/1‑150 CCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCACACAGGCT < 1:911192/76‑1 CCTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCACACAGGCT > 2:911192/1‑76 AACGCCGGCGCAAGGCCGGGTGGGTGGGCGCCGCCGGCCTGGCGGCACTGGTGCTGTGCAGCCTGTGGGGCTGGTCGTACCTGAACAACCGCGCCACCCTGGCCAGCATTGCCGACGAACTGGCCCAGGCCAAGGCCGACGACCAGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3479949‑3479798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTTGGCCTGGGCCAGTTCGTCGGCAATGCTGGCCAGGGTGGCGCGGTTGTTCAGGTACGACCAGCCCCACAGGCTGCACAGCACCAGTGCCGCCAGGCCGGCGGCGCCCACCCACCCGGCCTTGCGCCGGCGTTCACGGTGGTTGCTGG > NC_002947/3479817‑3479964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |