| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3839257 = | 27 (0.620) | 2 (0.050) | 4/240 | NT | 8.1% | coding (137/1158 nt) | PP_3389 | membrane protein |
| ? | NC_002947 | 3839280 = | 20 (0.490) | coding (160/1158 nt) | PP_3389 | membrane protein | |||||
GAAAATTATCCCAGGCAGCACCCCGCCGATCGTGACTAGCGTAATGAGGCCGCGCTTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3839411‑3839257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtgaaACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGC > NC_002947/3839280‑3839425 GAAAATTATCCCAGGCAGCACCCCGCCGATCGTGACTAGCGTAATGAGGCCGCGCTTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAA < 2:710519/150‑1 TTATCCCAGGCAGCACCCCGCCGATCGTGACTAGCGTAATGAGGCCGCGCTTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAA > 1:207793/1‑150 TTATCCCAGGCAGCACCCCGCCGATCGTGACTAGCGTAATGAGGCCGCGCTTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAA > 1:939902/1‑150 TTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCACTTTTCCCGGG‑TAAGTGAAACACC > 1:121884/1‑105 TTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCACTTTTCCCGGG‑TAAGTGAAACACC < 2:121884/105‑1 AATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAAACACCCCTCATACG < 1:678632/69‑1 AATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAAACACCCCTCATACG > 2:678632/1‑69 agtcgAACACCCCTCCTACGCGGCCCTGTTTATGCATTCAATGAATCCCGCGTGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCTGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATA < 2:401534/145‑1 GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCA < 1:104851/74‑1 GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCA > 2:104851/1‑74 TGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGC > 1:880878/1‑150 TGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGC > 2:1070055/1‑150 TGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAAGCGGCTGTGGCGGCTTAGAAGACAAGCGCGGGCCCATTACGATAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGC > 1:522981/1‑150 GAAAATTATCCCAGGCAGCACCCCGCCGATCGTGACTAGCGTAATGAGGCCGCGCTTCTCTTCTGAGCCGCCACAGCGCATTTCCATGTGGGTTTCATTGAATGCATAAACAGGGCCGCGTATGAGGGGTGTTTCAC‑TTACCCGGGAAAAGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3839411‑3839257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtgaaACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAATTTTCGGAACCGGCATAGC > NC_002947/3839280‑3839425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |