| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3969629 = | NA (NA) | 9 (0.220) | 6/240 | NT | NA | coding (220/321 nt) | PP_3499 | transposase |
| ? | NC_002947 | 3969667 = | NA (NA) | coding (258/321 nt) | PP_3499 | transposase | |||||
TGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3969784‑3969629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGT > NC_002947/3969667‑3969815 TGCCAGCGCGCATGTCCCTCGGCGCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT < 1:56552/150‑1TGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAACGACTCAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT < 1:860421/150‑1 CCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGA < 2:831818/150‑1 AGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATC < 2:717978/150‑1 AGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATC > 2:1028628/1‑150 GCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAttga < 1:1091915/150‑5 ATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT > 2:948774/1‑133 ATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT < 1:948774/133‑1 GCTCGGTGGCCAGCCAGATGGCATCGATGTGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATG > 1:80964/1‑130 GCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATG < 2:80964/130‑1 AGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT < 1:18948/114‑1 AGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGAT > 2:18948/1‑114 CCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAC < 1:17951/87‑1 CCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAC > 2:17951/1‑87 TTCACCGTGATCACTTGCCCGGCCACGGGCAA‑‑‑G‑TGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGC > 2:871994/1‑149 TTCACCGTGATCACTTGCCCGGCCACGGGCAA‑‑‑G‑TGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGC < 1:871994/149‑1 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGAT < 1:391721/116‑1 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGAT > 2:391721/1‑116 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGC > 2:727964/1‑150 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTG < 1:1128679/74‑1 ACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTG > 2:1128679/1‑74 CCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCG > 1:913201/1‑150 ATCACTTGCCCGGCCACGGGCAA‑‑‑G‑TGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCAC > 2:8065/1‑150 TGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGAT > 1:189741/1‑150 TGATCACGGTGAAATGGCAAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGCGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGGGACAGCATTGGCCCGGGTGgg > 2:494786/1‑148 GATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCGCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCCCTGGCACCGAGACAGCATTGGCCCGGATGATc > 2:305485/1‑149 TCACGGTGAAATGGCCAGCCTCGGATCCGGAGGGTTGTGCGCAATTTATTCGGGCTTTAGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGGCAGCATTGGCCCGGGCGATGGC > 2:324006/1‑150 TCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGC < 1:727964/150‑1 TCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATG > 1:857641/1‑80 TCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATG < 2:857641/80‑1 CACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGCTCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCG < 1:747429/150‑1 CACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCG < 1:739546/150‑1 CACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCG < 1:313437/150‑1 ACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGG < 1:717978/150‑1 ACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGG < 2:994399/118‑1 ACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGG > 1:994399/1‑118 CGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGT < 2:732672/150‑1 TGCCAGCGCGCATGTCCATCGGCTCGGTGGCCAGCCAGATGGCATCGATGCGGATCATTGAGCGAAAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3969784‑3969629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcacGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGT > NC_002947/3969667‑3969815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |