New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4697489	49 (1.130)	3 (0.070)	3/242	NT	5.4%	coding (594/696 nt)	kdpE	two‑component system DNA‑binding response regulator KdpE
	?	NC_002947	= 4697521	58 (1.410)					coding (562/696 nt)	kdpE	two‑component system DNA‑binding response regulator KdpE

ACGCGTCCAGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4697336‑4697489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC  <  NC_002947/4697521‑4697378                                                                                                                                                                                                                                                                                                            ACGCGTCCAGGCCCTGCAGGCGTTGGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC                                                                                                                                                      >  1:116808/1‑150         AGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATG                                                                                                                                              >  1:527215/1‑150             CCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC                                                                                                                                                      <  1:816746/138‑1             CCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC                                                                                                                                                      >  2:816746/1‑138                                          TGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCG                                                                                                             <  2:527215/150‑1                                                                      CAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGG                                                                                                            >  1:1059849/1‑123                                                                      CAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGG                                                                                                            <  2:1059849/123‑1                                                                                                                                                     CCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC  >  2:116808/1‑150                                                                                                                                                                                                                                                                                                            ACGCGTCCAGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4697336‑4697489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC  <  NC_002947/4697521‑4697378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.