New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4788403 = | 48 (1.110) | 4 (0.100) | 4/238 | NT | 7.9% | coding (5482/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
? | NC_002947 | 4788427 = | 48 (1.180) | coding (5458/6525 nt) | pvdI | non‑ribosomal peptide synthetase |
GCGGTTCTACCGCGAACTGATCAGCAATGACATCAGCGTGGTAGATGTGACCACCGCCTACTGGTTCATGCTGGCCAAGGACTTTGCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGCGAAGCCAT‑GCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4788557‑4788403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccggCGTGAAACTGGTGCAGGCGGCCGTAGTCGCGAGGGCCGTGCTCGGCAAAGTCCTTGGCCAGCATGAACCAGTAGGCGGTGGTCACATCTACCACGCTGATGTCATTGCTGATCAGTTCGCGGTAGAACCGCTCACTGCCCCACAACTC > NC_002947/4788427‑4788574 GCGGTTCTACCGCGAACTGATCAGCAATGACATCAGCGTGGTAGATGTGACCACCGCCTACTGGTTCATGCTGGCCAAGGACTTTGCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGCGAAGCCAT‑GCC > 2:987948/1‑150 TCAGCAATGACATCAGCGTGGTAGATGTGACCACCGCCTACTGGTTCATGCTGGCCAAGGACTTTGCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGC‑ATGGCTTCGCCGCCGGCGTGAAACTGGTGCA < 2:222386/150‑1 GCAATGACATCAGCGTGGTAGATGTGACCACCGCCTACTGGTTCATGCTGGCCAAGGACTTTGCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGC‑ATGGCTTCGCCGCCGGCGTGAAACTGGTGCAGGC < 1:707114/150‑1 GCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGC‑ATGGCTTCGCCGCCGGCGTGAAACTGG > 1:797485/1‑81 GCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGC‑ATGGCTTCGCCGCCGGCGTGAAACTGG < 2:797485/81‑1 GGCGTGAAACTGGTGCAGGTGGCCGTAGTCGCGAGGGCCGTGCTCGGCAAAGTCCTTGGCCAGCATGAACCAGTAGGCGGTGGTCACATCTACCACGCTGATGTCATTCCTGATCAGTTCGCGGTAGAACCGCTCACTGCCCCACAACTC < 2:1011782/150‑1 GGCGTGAAACTGGTGCAGGCGGCCGTAGTCGCGAGGGCCGTGCTCGGCAAAGTCCTTGGCCAGCATGAACCCGTAGGCCGTGGTCACATCTACCACGCTGATGTCATTGCTGATCAGTTCGCGGTAGAACCGCTCACTGCCCCACAACTC < 1:981380/150‑1 GGCGTGAAACTGGTGCAGGCGGCCGTAGTCGCGAGGGCCGTGCTCGGCAAAGTCCTTGGCCAGCATGAACCAGTAGGCGGTGGTCACATCTACCACGCTGATGTCATTGCTGATCAGTTCGCGGTAGAACCGCTCACTGCCCCACAACTC < 1:222386/150‑1 GCGGTTCTACCGCGAACTGATCAGCAATGACATCAGCGTGGTAGATGTGACCACCGCCTACTGGTTCATGCTGGCCAAGGACTTTGCCGAGCACGGCCCTCGCGACTACGGCCGCCTGCACCAGTTTCACGCCGGCGGCGAAGCCAT‑GCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4788557‑4788403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccggCGTGAAACTGGTGCAGGCGGCCGTAGTCGCGAGGGCCGTGCTCGGCAAAGTCCTTGGCCAGCATGAACCAGTAGGCGGTGGTCACATCTACCACGCTGATGTCATTGCTGATCAGTTCGCGGTAGAACCGCTCACTGCCCCACAACTC > NC_002947/4788427‑4788574 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |