New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5190385 = | 27 (0.620) | 5 (0.130) | 5/234 | NT | 17.0% | intergenic (‑72/+102) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
? | NC_002947 | 5190422 = | 24 (0.600) | intergenic (‑109/+65) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5190425‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG > NC_002947/5190422‑5190565 AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCA > 2:952282/1‑150 GATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTG < 1:213233/110‑1 GATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTG > 2:213233/1‑110 ATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGC < 1:318699/92‑1 ATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGC > 2:318699/1‑92 GGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG < 2:420327/150‑1 AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5190425‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG > NC_002947/5190422‑5190565 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |