New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5456645 =	39 (0.900)	2 (0.050)	4/244	NT	5.0%	coding (329/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	5456664 =	38 (0.910)					coding (348/2607 nt)	leuS	leucine‑‑tRNA ligase

GCCGGGTCCCAGTTCACGGTACCGTTCTTGCGGTAGATGATGCCTTTTTCGAACAGGCGGGTGAACAGCCACTGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCAGGCTCTTGAG‑CTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5456798‑5456645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggCCTGGCCATCGACTGG  >  NC_002947/5456664‑5456679                                                                                                                                                                             GCCGGGTCCCAGTTCACGGTACCGTTCTTGCGGTAGATGATGCCTTTTTCGAACAGGCGGGTGAACAGCCACTGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCAGGCTCTTGAG‑C                      >  2:270314/1‑150                                                                 ACAGCCACTGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCAGGCTCTTGAG‑CTGG                   <  1:1032266/89‑1                                                                 ACAGCCACTGCTCCCAACGGTAATAGTCGGGTTTGCAGGGGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCAGGCTCTTGAG‑CTGG                   >  2:1032266/1‑89                                                                         TGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCA‑GCTCAAGAGCCTGGGCCTGGCCATCGACTGG  >  1:953797/1‑98                                                                         TGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCA‑GCTCAAGAGCCTGGGCCTGGCCATCGACTGG  <  2:953797/98‑1                                                                                   GGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCA‑GCTCAAGAGCCTGGGCCTGG             >  1:1043954/1‑77                                                                                   GGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCA‑GCTCAAGAGCCTGGGCCTGG             <  2:1043954/77‑1                                                                                                                                                                             GCCGGGTCCCAGTTCACGGTACCGTTCTTGCGGTAGATGATGCCTTTTTCGAACAGGCGGGTGAACAGCCACTGCTCCCAACGGTAATAGTCGGGTTTGCAGGTGGTGACTTCACGTGCCCAGTCGATGGCCAGGCCCAGGCTCTTGAG‑CTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5456798‑5456645 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggCCTGGCCATCGACTGG  >  NC_002947/5456664‑5456679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.