New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5759458 | 25 (0.580) | 7 (0.160) | 6/252 | NT | 25.5% | intergenic (+11/+145) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
? | NC_002947 | = 5759552 | 16 (0.370) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
CGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5759333‑5759458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTAC < NC_002947/5759552‑5759476 CGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGCGGGCCTCTTCGCGGGTAAACC > 2:394966/1‑150 ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG < 1:109381/150‑1 ACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG < 1:394966/150‑1 AGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTAC > 1:1076778/1‑111 AGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTAC < 2:1076778/111‑1 TGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG > 1:798643/1‑86 TGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG < 2:798643/86‑1 CGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5759333‑5759458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTAC < NC_002947/5759552‑5759476 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |