New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5759460 =	25 (0.580)	5 (0.150)	4/190	NT	23.4%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759552 =	14 (0.430)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

ATGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759638‑5759460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGC  >  NC_002947/5759552‑5759687                                                                                                                                                                                                                                                                                                                             ATGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATCACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTA                                                                                                                                                                       >  1:111967/1‑150        AAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                <  1:694635/150‑1         AGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                                                                               <  2:1131073/150‑1         AGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                                                                               <  1:235969/150‑1         AGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGAGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                                                                               <  1:82958/150‑1          GCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGT                                                                                                                                                              <  1:745815/150‑1                     GCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                   <  1:651676/150‑1                     GCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCG                                                                                                                                                                 >  2:153051/1‑136                     GCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCG                                                                                                                                                                 <  1:153051/136‑1                      CCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAG                                                                                                                                                  >  1:797390/1‑150                       CTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                 <  2:987441/150‑1                          CTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                              <  2:163024/150‑1                                                   AAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTAAACCCGCtc                                                                                                                                                    >  1:704184/1‑117                                                   AAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTAAACCCGCtc                                                                                                                                                    <  2:704184/119‑3                                                                                                        GTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                >  1:313519/1‑54                                                                                                        GTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                <  2:313519/54‑1                                                                                                              CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTT                                                          >  2:1064412/1‑150                                                                                                              CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTC                                                                                                       >  1:487101/1‑105                                                                                                              CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTC                                                                                                       <  2:487101/105‑1                                                                                                                GCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCC                                                        >  1:992957/1‑150                                                                                                                       CAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATAC                                                 >  1:1127980/1‑150                                                                                                                                                      AGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAA                  <  1:815401/150‑1                                                                                                                                                        GAGCGGGTTTACCAGCGAAGAGGCACGCGCCGGCAACAAAAAATCGCCACGACAGGCGTTTGGTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGT                >  2:487109/1‑150                                                                                                                                                            GGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGAC            <  1:163024/150‑1                                                                                                                                                             GGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACC           >  1:430984/1‑150                                                                                                                                                               TTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGG         >  1:162394/1‑150                                                                                                                                                                  ACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGA      <  2:430984/150‑1                                                                                                                                                                      GCGAAGAGGCCCGCGCCGGCAACAACACCGCTCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGC  >  1:476648/1‑150                                                                                                                                                                                CCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGC                                 >  1:124075/1‑109                                                                                                                                                                                CCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGC                                 <  2:124075/109‑1                                                                                                                                                                                                                                                                                                                             ATGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759638‑5759460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGC  >  NC_002947/5759552‑5759687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.