New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5802257 | 40 (0.920) | 4 (0.100) | 4/240 | NT | 8.7% | coding (633/1239 nt) | pilQ | type IV pili biogenesis protein |
? | NC_002947 | = 5802273 | 46 (1.120) | coding (617/1239 nt) | pilQ | type IV pili biogenesis protein |
CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5802104‑5802257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgcTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC < NC_002947/5802273‑5802128 CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGG < 1:183479/150‑1 ACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTGTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCCCCGCGCACCCAACCCAGGCCAATACTGCTGCCGGCACGCTCCATACCGAGTTCTACGAACATCTCCTTGCCGGGC < 2:852283/150‑1 GCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTA > 1:451757/1‑150 CAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCGGCCC < 1:178644/93‑1 CAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCGGCCC > 2:178644/1‑93 GACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCG < 1:821254/44‑1 GACGAACAGCTCCTTGCCGGGCCGCTGTACGGCGAGAAACTGCG > 2:821254/1‑44 CCGCTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC > 2:393296/1‑150 CACCTTGGGCTGCGAAATGATTTCGCCGTTGCCGCTTTTTTCCATGGCACTGAGCTCCAGGTCCAGCAGCACGTCACCGCGCAACAAACCCAGGCCGATACTGCTGCCGGCACGCTCCAGACCGAGGTCGACGAACAGCTCCTTGCCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5802104‑5802257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgcTGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTGGGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGC < NC_002947/5802273‑5802128 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |