| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5903810 | 54 (1.250) | 6 (0.150) | 6/240 | NT | 10.6% | intergenic (+10/+97) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | = 5903965 | 50 (1.220) | coding (836/894 nt) | spuH | spermidine/putrescine ABC transporter permease | |||||
TGGCAACCGGGTTACCAGGACCATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5903657‑5903810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGA < NC_002947/5903965‑5903817 TGGCAACCGGGTTACCAGGACCATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGT > 1:628526/1‑150TGGCAACCGGGTTACCAGGACCATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGT < 1:982759/150‑1 AGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGTACTATCCACATTGGGATGCGGTATGGCTTGGAATCGGTACTGCAGCCAACTGTTCGCATCCGCAGGTCAAGg > 2:789670/1‑149 TCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAG > 2:670247/1‑150 TCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGCAGCCAACGCTTCGCGGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTC < 1:918643/90‑1 TCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGCAGCCAACGCTTCGCGGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTC > 2:918643/1‑90 ACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTT < 1:670247/150‑1 TGGCTTTGAATCGGTGCTGCAGCCAACGCTTCGCAGAAACAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG < 1:789670/150‑1 ATCGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTAAGGGGTGTGGTGAGCCCTGTGGGAGCGGGCc > 2:39384/1‑149 GGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGC > 2:219556/1‑150 GCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCCCAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCtc < 2:775265/150‑3 TGGCAACCGGGTTACCAGGACCATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5903657‑5903810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGA < NC_002947/5903965‑5903817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |