New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	941673 =	39 (0.900)	7 (0.170)	5/238	NT	15.8%	coding (3952/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	941708 =	38 (0.940)					coding (3917/18933 nt)	PP_0806	surface adhesion protein

TACCAGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGG  >  NC_002947/941524‑941818                                                                                                                                                      |                                                                                                                                                  tACCAGGTCGCTGGGGCTGGCGGGCGCAGTGGCCTTGTGTACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGtt                                                                                                                                                   >  1:820816/1‑150 (MQ=18)  ccgccggcaacagttcgataccgctggagttcacagccccggatatcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTg                                                                                                                                                  >  2:167806‑M1/149‑150 (MQ=255)  ccgccggcaacagttcgataccgctggagttcacagccccggatatcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgccgcgagccgggtgccactgtcgacgtgcgtgatgccaaTg                                                                                                                                                  >  1:932398‑M1/149‑150 (MQ=255)  aCCAGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTg                                                                                                                                                  <  2:173827/150‑1 (MQ=255)   ccAGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATCGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTgg                                                                                                                                                 <  1:866109/150‑1 (MQ=255)   acggcacGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTgg                                                                                                                                                 <  2:909312/144‑1 (MQ=255)    cAGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGc                                                                                                                                                >  1:323806/1‑150 (MQ=255)     aGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCa                                                                                                                                               >  2:1090259/1‑150 (MQ=255)      ggTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCAc                                                                                                                                              >  2:66279/1‑150 (MQ=255)      cggcaacagttcgataccgctggagttcacagccccggatatcacaccgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCAc                                                                                                                                              >  2:857556‑M1/145‑150 (MQ=255)         cGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGa                                                                                                                                           <  1:1081730/150‑1 (MQ=255)          gCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGAc                                                                                                                                          <  2:1024345/150‑1 (MQ=255)          gCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGAc                                                                                                                                          <  1:83041/150‑1 (MQ=255)          gCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGAc                                                                                                                                          <  1:807871/150‑1 (MQ=255)               ggCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCacac                                                                                                                                     >  1:408786/1‑150 (MQ=255)                      gggcgCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGcc                                                                                                                              >  1:950110/1‑150 (MQ=255)                                                aTTGCAGTGCCGAGGAAGCATTGCCGCTCGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATcacgca                                                                                                    <  2:1213/150‑1 (MQ=255)                                                 ttGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACAAGAGACGGTCACGGGGCCACTGGCATcacgcac                                                                                                   >  1:244378/1‑150 (MQ=18)                                                   accgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAt                                                                                                                >  2:237171‑M1/100‑135 (MQ=255)                                                   accgcccgaggcggtcaccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAt                                                                                                                <  1:237171‑M1/36‑1 (MQ=255)                                                    cAGTGCCGAGGAAGCATTGCCGCTTGCGTCGATCTGCCTTTTGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTc                                                                                                <  2:820816/150‑1 (MQ=21)                                                      gTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGa                                                                                              <  1:592359/150‑1 (MQ=255)                                                           gAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGGGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTg                                                                                         <  2:434508/150‑1 (MQ=255)                                                              gaggCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGAc                                                                                                                                          <  1:990318/95‑1 (MQ=255)                                                              gAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGAc                                                                                                                                          >  2:990318/1‑98 (MQ=255)                                                               aaGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATAACGCACGTCGACAGTGGCAc                                                                                     <  1:933696/150‑1 (MQ=255)                                                                  caccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAtt                                                                                                               <  1:888855‑M1/37‑1 (MQ=255)                                                                  caccgacatcctggtcggcccaggtggcacggccctgagtggtcgcggcgagccgggtgccactgtcgacgtgcgtgatgccaaTGGCACCGACCACACCCGTGCCGATCACGGTGCCAtt                                                                                                               >  2:888855‑M1/85‑121 (MQ=255)                                                                             gCGTCGGTCTGCACCAGGCTCAATAGTGCGACCGGCTGAGCGGCCTGGGCGGTATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCTCCCGGCTCGCCGCGa                                                                       <  2:68229/150‑1 (MQ=18)                                                                               gTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGAcc                                                                     >  1:1075632/1‑150 (MQ=255)                                                                               gTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGAcc                                                                     >  2:1023943/1‑150 (MQ=255)                                                                                         aCCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGcc                                                           >  2:438632/1‑150 (MQ=255)                                                                                         aCCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGATCGCCGCGACCACTCAGGGcc                                                           >  1:848571/1‑150 (MQ=255)                                                                                          ccAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGACATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCg                                                          >  2:409990/1‑150 (MQ=255)                                                                                           cAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGt                                                         <  2:1075632/150‑1 (MQ=255)                                                                                           cAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGt                                                         <  2:408786/150‑1 (MQ=255)                                                                                                tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCAc                                                                                     <  1:14330/117‑1 (MQ=255)                                                                                                tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCAc                                                                                     >  2:14330/1‑117 (MQ=255)                                                                                                tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCAc                                                    >  1:111873/1‑150 (MQ=255)                                                                                                tCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCAc                                                    >  1:275975/1‑150 (MQ=255)                                                                                                  aaTTGTTCGCCCGGCTGAGCGGCCGGGGTGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCt                                                  >  1:469215/1‑150 (MQ=255)                                                                                                  aaTTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTcgccgc                                                                         >  1:784327/1‑127 (MQ=255)                                                                                                  aaTTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTcgccgc                                                                         <  2:784327/127‑1 (MQ=255)                                                                                                          gCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGAc                                          >  2:31741/1‑150 (MQ=255)                                                                                                           cccGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGAcc                                         >  2:65861/1‑150 (MQ=255)                                                                                                                    gCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCg                                <  1:18795/150‑1 (MQ=255)                                                                                                                    gCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGAACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCg                                <  1:18788/150‑1 (MQ=255)                                                                                                                      ggCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGt                              <  1:1090259/150‑1 (MQ=255)                                                                                                                             gCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGcc                       >  2:920191/1‑150 (MQ=255)                                                                                                                                  atcgatcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCggg                  >  1:236841/1‑150 (MQ=255)                                                                                                                                      atcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgt              <  1:66279/150‑1 (MQ=255)                                                                                                                                       tcAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGgtg             >  1:159867/1‑150 (MQ=255)                                                                                                                                           gtcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGa          <  2:552522‑M1/138‑1 (MQ=255)                                                                                                                                           gtcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGa          >  1:552522‑M1/12‑149 (MQ=255)                                                                                                                                            tcggtgccaaCGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGata        <  2:1021235‑M1/140‑1 (MQ=255)                                                                                                                                                  ccGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCggg  >  1:751366/1‑150 (MQ=255)                                                                                                                                                  ccGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCggg  <  2:950110/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  TACCAGGTCGCTGGGGCTGGCGGGCGCAGTGGTGAGCGGGACTTCGAATTGCAGTGCCGAGGAAGCATTGCCGCTTGCGTCGGTCTGCACCAGGCTCAATTGTTCGCCCGGCTGAGCGGCCGGGGCGAGATCGATCAGGAAGGTGCCGTTGGCACCGACCACACCCGTGCCGATCACGGTGCCATTGGCATCACGCACGTCGACAGTGGCACCCGGCTCGCCGCGACCACTCAGGGCCGTGCCACCTGGGCCGACCAGGATGTCGGTGACCGCCTCGGGCGGTGTGATATCCGGG  >  NC_002947/941524‑941818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.