New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419697 =	21 (0.480)	3 (0.070)	3/240	NT	8.7%	coding (323/366 nt)	PP_1244	hypothetical protein
	?	NC_002947	1419800 =	43 (1.050)					coding (220/366 nt)	PP_1244	hypothetical protein

GGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGAGGAC  >  NC_002947/1419553‑1419846                                                                                                                                                 |                                                                                                                                                      ttgcggcagctccaatgatcctggagatgtttatgcgcaagatggtccctgatccacccctcgataccacccagttcctgcaagacactctggtccagtcctcagagtacgtactctgcgccctgtccgtggcccgccaatccgTGCAAc                                                                                                                                                  <  2:917305‑M1/6‑1 (MQ=255)     TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTgcc                                                                                                                                              <  1:428137‑M1/150‑2 (MQ=255)     TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCa                                                                                                                                              <  1:261401‑M1/150‑1 (MQ=255)            GGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGc                                                                                                                                       <  2:730499‑M1/150‑1 (MQ=255)                    ccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCACCGCCGACTCGa                                                                                                                               >  2:814928‑M2/76‑150 (MQ=255)                    ccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGa                                                                                                                               >  1:327954‑M2/76‑150 (MQ=255)                    CCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGa                                                                                                                               <  2:846341‑M1/150‑1 (MQ=255)                     CGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTCGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                                                                              <  1:312445‑M1/150‑1 (MQ=255)                      GCNCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGANCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAcc                                                                                                                             <  1:724066‑M1/150‑1 (MQ=255)                          ccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGcc                                                                                                                         >  2:157198‑M2/70‑150 (MQ=255)                            ACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGcccc                                                                                                                       <  1:454964‑M1/150‑1 (MQ=255)                                     gcaagatggtcccttatccacccctcgataccacccagttcctgcaagacactctggtccagtcctcagagtacgtactctgcgccctgtccgtggcccgccaatccgTg                                                                                                                                                      <  2:663330‑M1/2‑1 (MQ=255)                                     gcaagatggtcccttatccacccctcgataccacccagttcctgcaagacactctggtccagtcctcagagtacgtactctgcgccctgtccgtggcccgccaatccgTg                                                                                                                                                      >  1:663330‑M1/109‑110 (MQ=255)                                       gCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTc                                                                                                            >  2:209048/1‑150 (MQ=255)                                         aGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCa                                                                                                          >  1:157268/1‑150 (MQ=255)                                              tcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCa                                                                                                     <  1:157198‑M2/101‑1 (MQ=255)                                                   ggCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGAt                                                                                                >  1:48851/1‑150 (MQ=255)                                                              cccTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc                                                                                                                                               >  1:728585/1‑92 (MQ=255)                                                              cccTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc                                                                                                                                               <  2:728585/92‑1 (MQ=255)                                                               cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCAt                                                                                    >  1:27040‑M2/33‑150 (MQ=255)                                                               cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCAt                                                                                    >  1:181195‑M2/33‑150 (MQ=255)                                                                           ttcctgcaagacactctggtccagtcctcagagtacgtactctgcgccctgtccgtggcccgccaatccgTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCt                                                                        <  2:581869‑M1/80‑1 (MQ=255)                                                                            gcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCtg                                                                       >  2:270483‑M2/20‑150 (MQ=255)                                                                                  ccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCg                                                                 >  2:1080767‑M2/14‑150 (MQ=255)                                                                                  ccgcgaagaggccTGACCTGCTAATGCAAGGTGTAAGTCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCg                                                                 >  1:819963‑M2/14‑150 (MQ=255)                                                                                            gccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGa                                                       <  1:209048‑M2/147‑1 (MQ=255)                                                                                              cTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg                                                                                                   <  2:461058‑M2/103‑1 (MQ=255)                                                                                              cTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg                                                                                                   >  1:461058‑M2/2‑104 (MQ=255)                                                                                               tGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGtt                                                    <  2:27040/150‑1 (MQ=255)                                                                                               tGACCTGCTAATGCAAGGTGTGAGGCTCTGTAGGAAGATGCGTCCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGtt                                                    <  2:819963/150‑1 (MQ=255)                                                                                                   cTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCAc                                                >  1:372436/1‑150 (MQ=255)                                                                                                   cTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACCGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCAc                                                <  1:1080767/150‑1 (MQ=255)                                                                                                    cctcagagtacgtactcggcgccctgtccgtggcccgccaatccgTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACg                                               >  2:1085896‑M1/46‑150 (MQ=255)                                                                                                     gCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCACCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACgg                                              >  2:210634/1‑150 (MQ=255)                                                                                                     ctcagagtacgtactctgcgccctgtccgtggcccgccaatccgTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACgg                                              >  1:581869‑M1/45‑150 (MQ=255)                                                                                                          cgCAAGGTGTGAGGCTCTGTGGGTAAATGCGCCCGCATCTGCAACTGCATCAACGCCGTCTCGACCTGCCCCTGTACCGCTTCCATTTTATGTATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTgg                                         <  2:428137/149‑1 (MQ=255)                                                                                                                     aGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACggg                              >  2:983237/1‑149 (MQ=255)                                                                                                                       gCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACGTTCTCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACa                            >  1:922931/1‑150 (MQ=255)                                                                                                                         tctGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGa                                                       <  1:741450/121‑1 (MQ=255)                                                                                                                         tctGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGa                                                       >  2:741450/1‑121 (MQ=255)                                                                                                                             tgGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGgcgc                      >  2:589283/1‑150 (MQ=255)                                                                                                                                gTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc                                                                                          <  1:895204/79‑1 (MQ=255)                                                                                                                                gTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc                                                                                          >  2:895204/1‑79 (MQ=255)                                                                                                                                gTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCaga                   <  1:730499/150‑1 (MQ=255)                                                                                                                                gTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCaga                   >  2:825191/1‑150 (MQ=255)                                                                                                                                          ccGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGACTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTActc         >  1:614073/1‑150 (MQ=255)                                                                                                                                             cATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGCACGTACTCTgc      <  1:589283/150‑2 (MQ=255)                                                                                                                                              aTCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGAg     <  1:270483/150‑1 (MQ=255)                                                                                                                                               tCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGa      >  2:663168/1‑148 (MQ=255)                                                                                                                                               tCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGa      <  1:663168/148‑1 (MQ=255)                                                                                                                                                 TGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGAGGAc  <  2:1054842‑M1/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGTTGCACGGATTGGCGGGCCACGGACAGGGCGCAGAGTACGTACTCTGAGGAC  >  NC_002947/1419553‑1419846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.