New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1486848	35 (0.810)	6 (0.140)	4/244	NT	14.5%	coding (622/765 nt)	yhdZ	amino acid ABC transporter ATP‑binding protein
	?	NC_002947	= 1486867	37 (0.890)					coding (641/765 nt)	yhdZ	amino acid ABC transporter ATP‑binding protein

ATTGCCCGCGCGTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTG  >  NC_002947/1486704‑1486996                                                                                                                                                 |                                                                                                                                                     aTTGCCCGCGCGTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATg                                                                                                                                                 <  1:740376/150‑1 (MQ=255)  ttGCCCGCGCGTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATgg                                                                                                                                                <  1:881201/150‑1 (MQ=255)  ttGCCCGCGCGTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATgg                                                                                                                                                <  1:404651/150‑1 (MQ=255)       cgcgcgTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCttt                                                                                                                                           >  2:211500/1‑150 (MQ=255)                 gCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACcg                                                                                                                                 <  2:199139‑M2/150‑3 (MQ=255)                   aTGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGgtacgggcaaagcccatttcgtg                                                                                                                               <  2:917445‑M1/150‑24 (MQ=255)                   aTGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCAAGAAATGGGCTTTGCCCGTACcgtg                                                                                                                               >  2:753007‑M2/1‑146 (MQ=255)                    ggaAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCAACGgtacgggcaaagcccatttcgtgg                                                                                                                              <  2:722084‑M1/149‑25 (MQ=255)                     gAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACcgtgg                                                                                                                              >  2:546853‑M2/1‑144 (MQ=255)                     gAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACcgtgg                                                                                                                              <  1:546853‑M2/149‑6 (MQ=255)                        gCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGaa                                                                                                                          <  1:323142/150‑1 (MQ=255)                            aaGATCATGCTGTTCGACGAGCCGACCTAGGCACTGAACCCGGAAAGGGTCAATGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGAGGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCgg                                                                                                                      <  1:446762/150‑1 (MQ=37)                            aaGACCATGCTGGTCGACGAGCCGACCTCGGCACTGGACACGGCAATGGTCAAGGAAGTGCTCGATACCATCGCGGGCCTGGCCGAGGATGGCAGGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCgg                                                                                                                      <  1:1098664/150‑1 (MQ=255)                                       gTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCAt                                                                                                           <  1:175993/150‑1 (MQ=255)                                       gTTCGACGAGCCGACCTCGGCAATGGACCCGTAAATGGTCAAGGAAGTGCTCGATACCATGGTGTGCCTGGTCGAGTATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCAt                                                                                                           <  1:64901/150‑1 (MQ=38)                                                   gACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCga                                                                                               <  1:644003/150‑1 (MQ=255)                                                      cTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGgtacgggcaaagcccatttcgtgg                                                                                                                              >  1:372109‑M1/1‑92 (MQ=255)                                                      cTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGgtacgggcaaagcccatttcgtgg                                                                                                                              <  2:372109‑M1/116‑25 (MQ=255)                                                       tCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGAtt                                                                                           >  1:798336/1‑150 (MQ=255)                                                               ggACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCa                                                                                   <  2:709302/150‑1 (MQ=255)                                                                   ccGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGcc                                                                               >  1:639485/1‑150 (MQ=255)                                                                            gTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAt                                                                      <  2:639485/150‑1 (MQ=255)                                                                             tCAAGGAAGTGCTCGATACCACGGTGGGCCTGGCCGAGGATGGCATGACAACCTTGTTCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATg                                                                     >  1:357083/1‑150 (MQ=39)                                                                               aaGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGgtacgggcaaagcccatttcgtgg                                                                                                                              >  1:983825‑M1/1‑67 (MQ=255)                                                                               aaGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGgtacgggcaaagcccatttcgtgg                                                                                                                              <  2:983825‑M1/91‑25 (MQ=255)                                                                                 ggAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGActt                                                                 >  2:128132/1‑150 (MQ=255)                                                                                      tGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGcc                                                                                                                                        <  1:309225/74‑1 (MQ=255)                                                                                      tGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGcc                                                                                                                                        >  2:309225/1‑74 (MQ=255)                                                                                      tGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCg                                                            >  2:863378/1‑150 (MQ=255)                                                                                      tGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCg                                                            >  2:101954/1‑150 (MQ=255)                                                                                        cTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGAc                                                          <  1:128132/150‑1 (MQ=255)                                                                                        cTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGAc                                                          >  2:185940/1‑150 (MQ=255)                                                                                              aCCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCcg                                                    <  1:181891/150‑1 (MQ=255)                                                                                                cATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGa                                                                    <  2:99940/132‑1 (MQ=255)                                                                                                cATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGa                                                                    >  1:99940/1‑132 (MQ=255)                                                                                                cATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCcgcg                                                  >  1:877257/1‑150 (MQ=255)                                                                                                cATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCcgcg                                                  >  1:945924/1‑150 (MQ=255)                                                                                                               cGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGActt                                                                 >  2:1010570/1‑120 (MQ=255)                                                                                                               cGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGActt                                                                 <  1:1010570/120‑1 (MQ=255)                                                                                                                      gccATGACCCGGCTCTGCGTGACCCACGAAATTGGCTGTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGATCGAACCAAGTTGTTc                            <  2:454366/148‑1 (MQ=255)                                                                                                                       gCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTcc                           <  1:234490/150‑1 (MQ=255)                                                                                                                          tGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCa                        <  1:643640/150‑1 (MQ=255)                                                                                                                            aCCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGc                      <  1:199139/150‑1 (MQ=255)                                                                                                                                   tctGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGCACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATcc               >  1:785494/1‑150 (MQ=255)                                                                                                                                   tctGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAt                                                                      >  2:76183/1‑95 (MQ=255)                                                                                                                                   tctGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGAt                                                                      <  1:76183/95‑1 (MQ=255)                                                                                                                                             ccACGgtacgggcaaagcccatttcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttc      >  2:546853‑M1/1‑5 (MQ=255)                                                                                                                                             ccACGgtacgggcaaagcccatttcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttc      <  1:546853‑M1/149‑145 (MQ=255)                                                                                                                                             ccACGAAATGGGCTTTGCCCGTACcgttggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttcc     <  2:722084‑M2/150‑127 (MQ=255)                                                                                                                                             ccACGAAATGGGCTTTGCCCGTACcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgag                                       <  2:372109‑M2/116‑93 (MQ=255)                                                                                                                                             ccACGAAATGGGCTTTGCCCGTACcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgag                                       >  1:372109‑M2/1‑24 (MQ=255)                                                                                                                                             ccACGAAATGGGCTTTGCCCGTACcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttcctt                                                                >  1:983825‑M2/1‑24 (MQ=255)                                                                                                                                             ccACGAAATGGGCTTTGCCCGTACcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttcctt                                                                <  2:983825‑M2/91‑68 (MQ=255)                                                                                                                                              cACGgtacgggcaaagcccatttcttgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttcat    >  2:753007‑M1/1‑4 (MQ=255)                                                                                                                                              cACGAAATGGGCTTTGCCCGTACcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttcat    <  2:917445‑M2/150‑128 (MQ=255)                                                                                                                                              cACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAgtt                                >  1:228169/1‑122 (MQ=255)                                                                                                                                              cACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAgtt                                <  2:228169/122‑1 (MQ=255)                                                                                                                                               aCGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCt   >  1:926877/1‑150 (MQ=255)                                                                                                                                               aCGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCt   >  1:123341/1‑150 (MQ=255)                                                                                                                                                cGgtacgggcaaagcccatttcgtgggtcacgcagagcatggtcatgccatcctcggccaggcccaccatggtatcgagcacttccttgaccatttccgggtccagtgccgaggtcggctcgtcgaacagcatgatcttgggcttcatgc  <  2:199139‑M1/150‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     ATTGCCCGCGCGTTGTGCATGAAGCCCAAGATCATGCTGTTCGACGAGCCGACCTCGGCACTGGACCCGGAAATGGTCAAGGAAGTGCTCGATACCATGGTGGGCCTGGCCGAGGATGGCATGACCATGCTCTGCGTGACCCACGAAATGGGCTTTGCCCGTACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTG  >  NC_002947/1486704‑1486996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.