New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1531788 =	28 (0.650)	10 (0.290)	8/206	NT	35.3%	coding (130/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	1531884 =	14 (0.400)					coding (34/630 nt)	PP_1344	hypothetical protein

GCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGA  >  NC_002947/1531641‑1531932                                                                                                                                                    |                                                                                                                                                 gCAAGTGCTACACGCGCTCGGCCTGGTTCAGCGGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGCGTGTCGATTGTCGGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGc                                                                                                                                                <  1:192543/150‑1 (MQ=255)  tacccggaaacgatggtgaggaaagtggtggatttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGcc                                                                                                                                               <  1:1095965‑M1/4‑1 (MQ=255)   acccggaaacgatggtgaggaaagtggtggatttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCt                                                                                                                                              <  1:792099‑M1/5‑1 (MQ=255)   acccggaaacgatggtgaggaaagtggtggatttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCt                                                                                                                                              >  2:571290‑M1/146‑150 (MQ=255)           cAGGCGCTCGGCCTGGTTCAGCAGCGGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGc                                                                                                                                      <  2:427006/150‑1 (MQ=255)           acgatggtgaggaaagtggtggatttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGc                                                                                                                                      >  2:1072395‑M1/138‑150 (MQ=255)            aGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGc                                                                                                                                      >  1:834254/1‑149 (MQ=255)            aGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGc                                                                                                                                      <  2:834254/149‑1 (MQ=255)             ggCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCct                                                                                                                                    <  2:855554/150‑1 (MQ=255)                 cTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTc                                                                                                                                >  1:926277/1‑150 (MQ=255)                    ggCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTcgcg                                                                                                                             <  1:681418/150‑1 (MQ=255)                      ccTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCggg                                                                                                                           <  2:707336/150‑1 (MQ=255)                      ccTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCggg                                                                                                                           <  1:146151/150‑1 (MQ=255)                      ccTGGGTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCggg                                                                                                                           <  2:107990/150‑1 (MQ=255)                          gTTCAGCAGCAGGCTCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCg                                                                                                                                        <  1:95021/133‑1 (MQ=255)                          gTTCAGCAGCAGGCTCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCg                                                                                                                                        >  2:95021/1‑133 (MQ=255)                           ttCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAAc                                                                                                                      <  2:926277/150‑1 (MQ=255)                             gtggatttccacgatgctgatacagcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagacaaagtcttgtattgattTGCCATCGCCGGCCTCTTCGCGGGGGAAccc                                                                                                                    <  2:966735‑M1/31‑1 (MQ=255)                               gcagcagGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGc                                                                                                                  <  1:1029383/150‑1 (MQ=255)                                         cAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg                                                                                                        <  1:936826/150‑1 (MQ=255)                                               gcgcACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                            <  1:503658/124‑1 (MQ=255)                                               gcgcACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                            >  2:503658/1‑124 (MQ=255)                                                   aCCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTa                                                                                              <  2:413047/150‑1 (MQ=255)                                                    agcgttttggcaggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTAt                                                                                             <  2:167645‑M1/54‑1 (MQ=255)                                                     cTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATc                                                                                            >  2:497043/1‑150 (MQ=255)                                                               aggggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTTCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  >  2:137820‑M1/86‑150 (MQ=255)                                                               agGGCGGAAGCTGGCGTTGCGATGTTGGTTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGCATGAATTTACTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  <  1:619160/150‑1 (MQ=25)                                                                 gggcctgttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgg                                                                                >  1:167645‑M1/84‑150 (MQ=255)                                                                 ggCGGAAGGTGGCTGGGCGGGGGAGGGATTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGGTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgc                                                                                <  2:591815/150‑2 (MQ=255)                                                                        ttttagataggggcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcc                                                                         >  2:50541‑M1/77‑150 (MQ=255)                                                                              tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCtcc                                                                                                            >  2:1091799/1‑107 (MQ=255)                                                                              tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGc                                                                                                            <  1:1091799/109‑1 (MQ=255)                                                                              tGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGaa                                                                   <  1:497043/150‑1 (MQ=255)                                                                                    gcattttcactgagttcaaggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                             >  1:966735‑M1/65‑150 (MQ=255)                                                                                     gggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                            <  1:761442/150‑1 (MQ=255)                                                                                                     cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                            >  1:552746/1‑70 (MQ=255)                                                                                                     cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGCTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                            <  2:552746/70‑1 (MQ=255)                                                                                                       ggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  >  1:1024948‑M1/46‑110 (MQ=255)                                                                                                       ggcttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  <  2:1024948‑M1/65‑1 (MQ=255)                                                                                                          ttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  <  2:823960‑M1/65‑1 (MQ=255)                                                                                                          ttggcaacatgaaagctatcgagaaccagtcttgtctttggcTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGc                                                                                  >  1:823960‑M1/43‑107 (MQ=255)                                                                                                                                        tAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgg                                                                                >  1:46715/1‑79 (MQ=255)                                                                                                                                        tAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCgg                                                                                <  2:46715/79‑1 (MQ=255)                                                                                                                                               tcCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGa  >  1:275570/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGA  >  NC_002947/1531641‑1531932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.