New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2719748 =	28 (0.650)	3 (0.070)	3/242	NT	9.7%	coding (51/609 nt)	PP_2379	cytochrome oxidase biogenesis protein
	?	NC_002947	2719779 =	29 (0.700)					coding (82/609 nt)	PP_2379	cytochrome oxidase biogenesis protein

GTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTT  >  NC_002947/2719602‑2719886                                                                                                                                                   |                                                                                                                                           tgggtgaagccgaagaagcccatcggcatgctgccgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggccggg                                                                                                                                         >  1:109443‑M1/147‑150 (MQ=255) tgggtgaagccgaagaagaccatcggcatgctgccgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggccggg                                                                                                                                         >  1:818928‑M1/147‑150 (MQ=255)       tAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGc                                                                                                                                   >  2:722638/1‑150 (MQ=255)             cccTCTTTGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCctgctg                                                                                                                             <  2:62125/150‑1 (MQ=255)             cccTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCAGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCGTGGCctgctg                                                                                                                             >  1:573243/1‑150 (MQ=255)              ccTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTgg                                                                                                                            <  1:722638/150‑1 (MQ=255)                 ctGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAg                                                                                                                         <  1:217585/150‑1 (MQ=255)                                   cgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCggg                                                                                                       >  2:1036638‑M1/113‑150 (MQ=255)                                       ccGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGc                                                                                                                                        >  2:871418/1‑113 (MQ=255)                                       ccGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGc                                                                                                                                        <  1:871418/113‑1 (MQ=255)                                           cgatctgACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTTTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAg                                                                                               <  1:560063/144‑1 (MQ=255)                                                  aCCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGATGGCGGGCGGGAGCCCTGCCCGGGGGCCCGAggcgatcg                                                                                        >  2:560063/1‑143 (MQ=255)                                                         cGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCaa                                                                                 <  1:202094/150‑1 (MQ=255)                                                              cGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACa                                                                            >  1:938362/1‑150 (MQ=255)                                                                 gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCCGCCAGGCTGCGGGCCGGGCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa                                                                         <  1:467798/150‑1 (MQ=255)                                                                      ggCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAAc                                                                    <  1:83313/150‑1 (MQ=255)                                                                          ccTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGaaa                                                                >  2:914042/1‑150 (MQ=255)                                                                            ttCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATc                                                              <  2:303680/150‑1 (MQ=255)                                                                               ccTGTAAAGGATGGTTTAATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTc                                                           <  2:634935/150‑1 (MQ=255)                                                                                 tGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg                                                         <  1:914042/150‑1 (MQ=255)                                                                                   tAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGgc                                                       <  1:809312/150‑1 (MQ=255)                                                                                        ttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCa                                                                                                                   >  1:640447‑M1/60‑85 (MQ=255)                                                                                        ttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCa                                                                                                                   <  2:640447‑M1/26‑1 (MQ=255)                                                                                        gATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAg                                                  >  2:892821/1‑150 (MQ=255)                                                                                              ttCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGc                                            <  2:113875/150‑1 (MQ=255)                                                                                                    aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg                                                         <  2:497130/131‑1 (MQ=255)                                                                                                    aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg                                                         >  1:497130/1‑131 (MQ=255)                                                                                                    aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCaaa                                      >  1:293578/1‑150 (MQ=255)                                                                                                    aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCaaa                                      <  2:938362/150‑1 (MQ=255)                                                                                                     atgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGGGTTCAAGTCCGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAg                                     >  2:583358/1‑150 (MQ=255)                                                                                                        aTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAcc                                  >  2:44519/1‑150 (MQ=255)                                                                                                                  ccGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTaa                        >  2:885793/1‑150 (MQ=255)                                                                                                                   cGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAAc                       <  2:293578/150‑1 (MQ=255)                                                                                                                               gTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTg           <  2:683955/150‑1 (MQ=255)                                                                                                                                        aTGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGCTCACGTACGGCAACAAACGGAGGAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCttt  >  1:981162/1‑150 (MQ=255)                                                                                                                                                  tcGGGCTTGGCCTGCTGGCAGGCTGCAGCGCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCaa                             >  1:758793/1‑113 (MQ=255)                                                                                                                                                  tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTc                                                                                            >  2:1071632/1‑50 (MQ=255)                                                                                                                                                  tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTc                                                                                            <  1:1071632/50‑1 (MQ=255)                                                                                                                                                  tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCaa                             <  2:758793/113‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           GTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTT  >  NC_002947/2719602‑2719886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.