New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2895970	32 (0.740)	5 (0.120)	5/250	NT	13.4%	coding (97/714 nt)	PP_2550	transcriptional regulator
	?	NC_002947	= 2895991	33 (0.770)					coding (118/714 nt)	PP_2550	transcriptional regulator

CCACTTTTGGCCGGTCGCTTCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTGATGCCGTGCAATACCATGCGGTG  >  NC_002947/2895822‑2896116                                                                                                                                                     |                                                                                                                                                   ccACTTTTGGCCGGTCGCTTCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCaa                                                                                                                                                   >  1:949232/1‑150 (MQ=255)  cACTTTTGGCCGGTCGCTTCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAg                                                                                                                                                  >  1:245315/1‑150 (MQ=255)                 gCTTCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATccc                                                                                                                                   >  1:328398/1‑150 (MQ=255)                   ttCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGa                                                                                                                                 <  1:948412/150‑1 (MQ=255)                   ttCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGa                                                                                                                                 <  2:529789/150‑1 (MQ=255)                     ccTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACACTGTGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGCAATCTAGATCGCGGCCAAGTCGGGTGCCGATCCCGACa                                                                                                                               <  1:183850/150‑1 (MQ=255)                         aaCCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGATGAagtcgggatcggcacccgacttggc                                                                                                                           <  1:30498‑M1/150‑26 (MQ=255)                           ccGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCg                                                                                                                                               <  2:874746/128‑1 (MQ=255)                           ccGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCg                                                                                                                                               >  1:874746/1‑128 (MQ=255)                              gCCGCTGAAACAAGAGAGTCGACTTGGGCGCACAGTGGAACGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGACAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTACAGATCACGACATGAACCagc                                                                                                                      >  2:550459/1‑150 (MQ=255)                              gCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGGCATGAACCcgc                                                                                                                      <  2:441669/150‑1 (MQ=255)                              gCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCcgc                                                                                                                      <  1:291832/150‑1 (MQ=255)                                   tGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCgcgcctg                                                                                                                 >  1:681079/1‑150 (MQ=255)                                         aaGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGcgcctgcgcctg                                                                                                           >  1:877317/1‑150 (MQ=255)                                             gagTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCa                                                                                                       <  2:328398/150‑1 (MQ=255)                                               gTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATc                                                                                                     <  1:928518/150‑1 (MQ=255)                                                          cgcACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCgcgcctgc                                                                                                                <  1:736015/128‑1 (MQ=255)                                                          cgcACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCgcgcctgc                                                                                                                >  2:736015/1‑128 (MQ=255)                                                            cacaGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGCCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCaaga                                                                                        >  2:1089579/1‑150 (MQ=255)                                                                  ggAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTAAAACCGCCTACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCtt                                                                                  <  2:1122672/150‑1 (MQ=255)                                                                   gAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTc                                                                                 >  2:428863/1‑150 (MQ=255)                                                                        ccAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGt                                                                                                   >  1:140129/1‑127 (MQ=255)                                                                        caaaaCATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGt                                                                                                   <  2:140129/125‑1 (MQ=255)                                                                          aaaCATAGAGAAACAGCGGCCAATGCCAAATTCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCATGTCGGGATCGGCACCCGACTtggccgcgatctggatttccttg                                                                                                        <  1:203408‑M2/120‑24 (MQ=255)                                                                          aaaCATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCATGTCGGGATCGGCACCCGACTtggccgcgatctggatttccttg                                                                                                        >  2:203408‑M2/1‑97 (MQ=255)                                                                                 gagaAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGCCCCGCgaga                                                                   >  2:297123/1‑150 (MQ=255)                                                                                         gCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCt                                                               >  2:1061503/1‑146 (MQ=255)                                                                                         gCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCt                                                               <  1:1061503/146‑1 (MQ=255)                                                                                             ccAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCggg                                                       <  1:177343/150‑1 (MQ=255)                                                                                             ccAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCggg                                                       <  2:681079/150‑1 (MQ=255)                                                                                              cAATGCCAAAGGCAAGATCATGGGCAAGCTGGGCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGc                                                      >  1:213249/1‑150 (MQ=255)                                                                                               aaTGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCa                                                     >  2:827944/1‑150 (MQ=255)                                                                                                    cAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCg                                                >  2:1121562/1‑150 (MQ=255)                                                                                                       aGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCaa                                             <  2:7822/150‑1 (MQ=255)                                                                                                           aaGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAtgtcgggatcggcacccgacttg                                                                                                                             >  2:799480‑M1/1‑43 (MQ=255)                                                                                                           aaGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAtgtcgggatcggcacccgacttg                                                                                                                             <  1:799480‑M1/66‑24 (MQ=255)                                                                                                           aaGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCGCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGgc                                         >  2:502750/1‑150 (MQ=255)                                                                                                               tCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTg                                     >  1:556281/1‑150 (MQ=255)                                                                                                                           ggTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTg                         <  2:245315/149‑1 (MQ=255)                                                                                                                               cAAGGAAATCCAGATCGCGGCCAagtcgggtgccgatcccgacatggccgcgatctggatttccttggacagcttgcccatgatcttgcctttggcattggccgctgtttctctatgttt                                                   >  2:203408‑M1/1‑23 (MQ=255)                                                                                                                               cAAGGAAATCCAGATCGCGGCCAagtcgggtgccgatcccgacatggccgcgatctggatttccttggacagcttgcccatgatcttgaatttggcattggccgctgtttctctatgttt                                                   <  1:203408‑M1/120‑98 (MQ=255)                                                                                                                                    aaaTCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTGATGCCGTGc                <  2:980171/150‑1 (MQ=255)                                                                                                                                      aTCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTGATGCCGTGCaa              >  1:374135/1‑150 (MQ=255)                                                                                                                                                  gCCAAGTCGGGTGCCGATCCCGACTtcatcgcgatctggatttccttggacagcttgcccatgatcttgcctttggcattggccgctgtttctctatgtttggctttccactgtgcgcccatgtcgactctcttgtttcagcggccggtt  <  1:30498‑M2/150‑126 (MQ=255)                                                                                                                                                  gCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCGTCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTGATGCCGTGCAATACCATGCGGTg  >  1:389362/1‑150 (MQ=255)                                                                                                                                                    cAAGTCGGGTGCCGATCCCGACAtggccgcgatctggatttccttggacagcttgcccatgatctt                                                                                    >  2:799480‑M2/1‑23 (MQ=255)                                                                                                                                                    cAAGTCGGGTGCCGATCCCGACAtggccgcgatctggatttccttggacagcttgcccatgatctt                                                                                    <  1:799480‑M2/66‑44 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCACTTTTGGCCGGTCGCTTCCTGAACCGGCCGCTGAAACAAGAGAGTCGACATGGGCGCACAGTGGAAAGCCAAACATAGAGAAACAGCGGCCAATGCCAAAGGCAAGATCATGGGCAAGCTGTCCAAGGAAATCCAGATCGCGGCCAAGTCGGGTGCCGATCCCGACATGAACCCGCGCCTGCGCCTGGCCATCGTGCAAGCCAAGAAGGCTTCGATGACCCGCGAGACCCTGGATCGGGCAATCCGCAAGGGCGCTGGCCTGGACGGTGATGCCGTGCAATACCATGCGGTG  >  NC_002947/2895822‑2896116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.